DY258382

Overview
NameDY258382
Unique NameDY258382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258382_ssr40 microsatellite DY258382_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1108 contig Ccv1_Contig1108:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 6.454e-88
Identity = 150/197 (76.14%), Postives = 176/197 (89.34%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTKVLDMSSMPIDEPSIKVEQENMSK 591
            KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV+DKMP+HEYYEYFGPDYTLHVAPSNMENKNSRQ+LEEIRN LL  LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RWDPDSDMDVDD+RK +P+RVKREAVEP+ KD++GLKG+ E+ +G ++  D+S STKV  ++ + ++E S+K+E+E  +K
Sbjct:  294 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDVDDDRKPIPSRVKREAVEPDTKDKDGLKGIMERGKGCEVEVDESGSTKVTGVNPVGVEEASVKMEEEGTNK 490          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.186e-63
Identity = 129/209 (61.72%), Postives = 158/209 (75.60%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDD--------ERKSLPNRVKREAVEPEQKDREGLKGMAEQARGFDMIADDSISTK---VLDMSSMPIDEPS-IKVEQENMSK 591
            ++MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALG E +DKMP +EYYEYFGPDYTLHVAPSNMENKN+RQ L++IR+K    LSKL+HAPSV FQER PD+E+PE DEDQ+D DER DPDSDM+VDD         R  L  ++KRE  E   + ++G + +A + RG + +A+D  S+K     D S+M IDEPS +K E E+ +K
Sbjct:  299 RYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENKNTRQQLDDIRSK----LSKLRHAPSVHFQERVPDTEIPEQDEDQDDPDERHDPDSDMEVDDHKAVEESSRRSILGIKIKREFGENATRVQDGGR-VASEHRGLEPMAEDIGSSKQAPQADASAMAIDEPSNVKNEPESSTK 502          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.249e-40
Identity = 83/139 (59.71%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDP---------DSDMDVDDE 390
            +F+RS+NVPL++LGGGGYTIRNVARCWCYET VA+GVE D+K+P +EY+EYFGPDYTLHV PS MEN N+ + +E IRN LLE LS L HAPSVQFQ  PP + +   DE ++D + R  P         +SD D DD+
Sbjct:  298 RFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRV--LDEPEDDMETRPKPRIWSGTATYESDSDDDDK 434          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.782e-37
Identity = 82/180 (45.56%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 483
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.782e-37
Identity = 82/180 (45.56%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 483
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.782e-37
Identity = 82/180 (45.56%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 483
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED+ED D+R                 DSD + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEEDPDKRISICSSDKRIACEEEFSDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.155e-36
Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 483
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED++D D+R                 DS+ + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.155e-36
Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPE--ADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPE---QKDREGLKGMAEQAR 483
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +PE   DED++D D+R                 DS+ + +  RK+  N  K + V+ E   +KD E  K + E+ +
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEK 464          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.155e-36
Identity = 81/185 (43.78%), Postives = 120/185 (64.86%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEA-DEDQEDGDERWD--------------PDSDMDVDDERKSLPN--RVKREAVEPEQKDREGLKGMAEQARGFDMIAD 504
            +F+++FN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P DS   ++ +ED+ED D+R                 DS+ + +  RK++ N  +VKR   E E+K+ E  K + E+ +  D   D
Sbjct:  286 EFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTE-EEKEGEDKKDVKEEEKAKDEKTD 469          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.277e-35
Identity = 73/166 (43.98%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDS-ELPEADEDQEDGDERWD--------------PDSDMDVDDERKSLPNRVKREAVEPEQKDRE 453
            +F++SFN+P+L+LGGGGYTIRNVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + LE+I+ +L E L  L HAP VQ Q  P D+ +    DE++ED ++R                 DS+ + +  RK++ N  K + V+ E++  E
Sbjct:  286 EFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEKEE 451          
The following BLAST results are available for this feature:
BLAST of DY258382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDA19_ARATH6.454e-8876.14Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE7.186e-6361.72Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDA6_ARATH2.249e-4059.71Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_RAT1.782e-3745.56Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE1.782e-3745.56Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN1.782e-3745.56Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_PONAB1.155e-3644.44Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN1.155e-3644.44Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1B_XENLA1.155e-3643.78Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDAC1_CHICK1.277e-3543.98Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258382 ID=DY258382; Name=DY258382; organism=Citrus clementina; type=EST; length=815bp
AAATTTATGAGATCATTCAATGTGCCTCTGTTGCTGCTGGGTGGTGGTGG
TTACACTATTCGGAATGTTGCTCGTTGCTGGTGCTACGAGACAGGAGTTG
CACTTGGAGTAGAGGTTGATGACAAGATGCCACAGCATGAGTATTATGAG
TATTTTGGTCCTGACTATACTCTTCATGTTGCTCCCAGTAACATGGAGAA
TAAGAATTCGCGCCAGTTGCTTGAGGAAATAAGGAATAAGCTTCTCGAAT
ATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTTCAGGAAAGACCA
CCTGATTCTGAACTTCCAGAGGCGGATGAAGATCAGGAGGATGGCGATGA
GAGATGGGATCCAGATTCTGACATGGATGTTGATGATGAACGAAAGTCCC
TACCAAACAGAGTTAAGAGAGAAGCAGTTGAACCTGAGCAAAAAGATCGG
GAGGGCCTTAAAGGAATGGCCGAGCAAGCTAGAGGCTTCGACATGATTGC
AGACGATTCTATAAGCACAAAGGTTTTAGATATGAGTTCAATGCCAATTG
ATGAACCGAGCATCAAAGTTGAACAAGAAAACATGAGCAAGGCATCTGAT
CACATGTACCCGCATTCGTAACTAAACTTTATCTCAGCATCGACATCTGC
TATACGAATTATGTGTTTTAGACATGAAAACCTGATTGGTTGTTCCAAAC
ATCGCTTTCCAAGTTATATTTCTCCCATCAGTCTAATGTATTGAAGTATA
AAACTTCTGTCCTAGCAAAATGTCAAACTTATTTTCTTTGATATTTATCC
TCGTGCTTTGGCCGC
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