DY258392

Overview
NameDY258392
Unique NameDY258392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1111 contig Ccv1_Contig1111:1..1315. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258392 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.474e-40
Identity = 79/142 (55.63%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  114 RFIIRSCKSTTYPALRVKTLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLTKSVQELNHLGQAKGQDFLWHMRHVETWVSAALTDENTCTDGFRGKALEGKVKSSVKA 539
            +FI  SC  TTYPA+  ++LSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+++S  E+ +L  AKG DF + M +VETWVSAALTDE TC DGF GK ++GK+K SV+A
Sbjct:   27 QFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRA 168          
The following BLAST results are available for this feature:
BLAST of DY258392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA4.474e-4055.6321 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258392 ID=DY258392; Name=DY258392; organism=Citrus clementina; type=EST; length=1315bp
GATAGAACAAATACTTATTTCCCCACGACAAGTTTAATTTTTGCCGACTT
TTGTTATGGCTCTCTCCCCTCCACATCATAGGCTGGACCACAGCTGGCGG
CATCGCTGACACAAGATTTATCATAAGGTCATGCAAATCCACAACTTATC
CAGCGCTGAGAGTGAAGACTCTCTCAGCTTACGCCCCATCAATTCAACAA
AGCCCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGAGCCTCTCCAGGGC
CCAATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAGTTCAGGAACCTGA
AGCACAGAGAGTATGAGGCGATTGCCGACTGCTTGGATGAGATGGGTGAC
ACTGTGGACCGGCTCACCAAGTCGGTTCAGGAGCTGAACCACCTGGGTCA
GGCCAAGGGTCAGGACTTTCTGTGGCACATGAGACACGTCGAGACATGGG
TTAGTGCTGCTTTGACTGATGAGAACACTTGTACTGATGGGTTCCGTGGC
AAGGCCTTGGAGGGTAAGGTTAAGTCCTCTGTTAAGGCTCCAGGTTGTTA
AATGTCGCTCATGTCACTAGCAATGCCCCTTTCACTGATCAATAAGATTG
CTGGGAAACCCCGAGCCGCAATTAACCATATGGCTGTGTGAATGTTTAGC
GAGAGGTAGTGTCTCTTCTTACCTTAGCGTTGCTTCTAACGCAACACCAT
AACGCATCACTCAACTACATACCAATCACAATACCACCAACACACAACAA
CACGAACCCCACCCCTCCGGGACACCCTCGCCCCCAAAAACAAACAATGG
TTATACATTCTGCCGCAACCACCAGTCAACCCCCAAAAAAAAAAAAACAC
ACTCTTTGCCCCCACACGAACTCCCCCCAACACGACTCCAATAACAACGG
ACAAACCCCTTCCATGGCACACCCGGCGCCCGGACCCACAAAACCTCAAC
ATCAAAACTCCCACAAAAAAACAAATCCCCCACACCTTAAAACACACTCA
CCCACGACAACAAAACAAAACCCCAATACTACCCATCCCGATAATCACAT
ACCTTAAATACCCCCCCACCCCTCCCTTCCTCTGCAACCCACAAACCACC
CCCCCCCCCCTCCCCTCGAAACGCCCTCCACCCTTATCATCTCTCCCCCC
CTCCCACCCCCCCCCCCCCCCCCACCACCCCACTCCTTAACTTACCCCCC
CCTCACCCACCACACCGACTTTCTAACTCCTAAATCCCTTCCTCCCCCTC
TCCTCCCCGCCTTCCCTCTCCCCCCCTCTGCCCCTCCCCACACCACCCGG
CCCCCATTACCCTTT
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