DY258403

Overview
NameDY258403
Unique NameDY258403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:364..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258403 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.854e-22
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 3
Query:    3 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 176
            CPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  284 CPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DY258403 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:    3 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 152
            CPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  395 CPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DY258403 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.205e-20
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 173
            CPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  403 CPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DY258403 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3
Query:    3 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 149
            CP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  414 CPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DY258403 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3
Query:    3 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 152
            CP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  423 CPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of DY258403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYSPL_SOLLC6.854e-2274.14Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ7.578e-2180.00Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH2.205e-2063.16Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ5.620e-1669.39Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ7.109e-1148.15Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CC10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258403 ID=DY258403; Name=DY258403; organism=Citrus clementina; type=EST; length=500bp
GCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGC
CCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAG
CAAGGACAACCCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAAC
CTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAG
TTGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCGT
GCTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCAT
TCCAAACGTTAATGTACCGGCAGGTGGATGGTCTGTTAAATATTTATTCG
GACGTTGGTTTGGTATATAGCGTTGTAAGTTATCTATCTGCGTTGAATCT
GAACAATGCACAAACAAATTGTTGTTATCTATTTCCAATGTCCTCTACCA
AATCCCTGGCGTCATTCAGCGGAGGCTTTTATGAATTGATATTTAACGAT
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