DY258406

Overview
NameDY258406
Unique NameDY258406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10168 contig Ccv1_Contig10168:28..1298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258406 vs. ExPASy Swiss-Prot
Match: Y3453_DICDI (Uncharacterized protein DDB_G0273453/DDB_G0273565 OS=Dictyostelium discoideum GN=DDB_G0273453 PE=4 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.267e-39
Identity = 53/97 (54.64%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:  199 ISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITNEHKHMERFAVRAKYMTLYPAKNKYVKYIRN 489
            +S K+  ++G++AQ+EM+ + LD LI  +E+R ES++VEGVHL    ++ L+KKHPS IPF++YI+NE KH ERFA+R+KYMTL P +NKY KY +N
Sbjct:  321 LSHKEKILQGYEAQNEMIFNKLDILIGHYEKRKESLIVEGVHLDTKLILRLVKKHPSCIPFLMYISNEAKHKERFAIRSKYMTLDPHQNKYTKYFKN 417

HSP 2 Score: 64.6994 bits (156), Expect = 3.267e-39
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  482 FEIIITIQDYLCQRADKHLVPKINNTNVDKTVTTIHATVFHCLRRR-EGGEQLYDPIPNTVTVIAEEYRTPCGTPSLSSKGMFH*SKKK 745
            F+ I  I D+LC  AD+H++P+I+NT++D+++ TIH T+F CL+R+ + GE  Y+   + + ++  +Y         SSKGM    +KK
Sbjct:  415 FKNIRIINDHLCHGADEHMIPQIDNTSIDRSLATIHGTIFACLKRKVQCGESYYNHETDKMNMLYNQYE-QIQHQFWSSKGMLRLIQKK 502
The following BLAST results are available for this feature:
BLAST of DY258406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3453_DICDI3.267e-3954.64Uncharacterized protein DDB_G0273453/DDB_G0273565 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CD10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258406 ID=DY258406; Name=DY258406; organism=Citrus clementina; type=EST; length=1271bp
AAACCTCTACTCGGGGCTTCTACCGACCATGCGGGGGAGTTCTTGGACCC
TGACCCAGCTGCAGAATCAAAGGCTAAAAAGCACGCCATAAAATTGGCAG
GTGCTGCACTTTCAGTTCCAAAGGATGAAGCATCCAATAGTTCAGCAACT
GGGAAATCCGATATCCGTCCAGAGGTTGGTTCCAGTGCAGCTGAATTGAT
TAGTCCAAAGCAGATGGCTATTGAAGGATTTAAGGCTCAAAGTGAGATGG
TCATTGACAGCCTAGATCGACTGATTACTGCATGGGAAGAAAGGAATGAA
TCAGTTGTTGTTGAGGGTGTTCATTTAAGCCTGAATTTTGTGATGGGGCT
TATGAAGAAACACCCATCAATCATACCTTTCATGATATACATCACAAATG
AACATAAACACATGGAACGATTTGCAGTCCGCGCAAAGTACATGACACTA
TACCCAGCCAAAAATAAATATGTCAAGTATATTCGAAATTATTATAACTA
TACAGGATTATCTCTGTCAGCGGGCTGACAAGCATCTGGTCCCCAAAATA
AACAATACTAATGTTGACAAGACTGTAACAACCATCCATGCAACGGTCTT
CCACTGCCTTCGCAGGCGTGAAGGAGGAGAGCAGCTTTATGATCCCATCC
CTAATACAGTCACTGTGATTGCTGAGGAGTATAGGACCCCGTGTGGAACA
CCTTCCTTGAGCTCCAAGGGGATGTTTCACTGATCCAAAAAAAAGGTTCC
TCTAGGATCCTGATGGCTCTTTCTTTATTACTGATCCCCCCTCCCCCCAG
GCTTGGCCTGTCACGTCCGCGCGAACTAATGCTCACCCCCAACCCGGCCC
CTGGAACCGACACAAAAAATAGGGGATCCCCATTTTCTGGCCCCTTTAAA
GATTGGAAAAGAAAACCCCTTTACTCTCCATTTGTGCCCCTTTTGGATCC
CCTGCCTGGTACCTGTACCGTTTCCCCCGCTCTCCCCCGGAACGTGGGAA
TTAATCTGCCGGCCAAAAACGCGTGTGGGGCCAAACAAACCCCCCCCCCT
CTCGCCCTTACCTCCCCCGGGATGCCCTCAGGCACCCCTCCCCGACGGAC
CCCGGGGGGGAATCACCCCCCCCCCCCCCCCATGTCGGATAAAACAAAGC
TCATTACACACCCCCCTTCTCCGCCCCTCACCCCGCTATCATACACTTAT
CTTTCCCTCATATAACCACTGCGCAAACTCCACCCACCCCCCCCCTTCTT
AAAATACAAAAAATTTACCAA
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