DY258409

Overview
NameDY258409
Unique NameDY258409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1116 contig Ccv1_Contig1116:1..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258409 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 8.234e-81
Identity = 98/162 (60.49%), Postives = 128/162 (79.01%), Query Frame = 3 
Query:  213 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 686
            G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++FS DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDF
Sbjct:   11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDF 172

HSP 2 Score: 114.005 bits (284), Expect = 8.234e-81
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:  679 WTLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSQDGTNHFCF-AQSRGDKALLAGYEYRTWNKLAHKKVLRKPGFVLSISLDGKY 966
            ++LDSEFLATTSTDGSARIWK EDG   + L R+ DE IELCRFS+DGT  F F A  RGD  ++  Y+  TW KL  KK+ RK    +++SLDGKY
Sbjct:  172 FSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFKKLSRKTASTMAVSLDGKY 268
The following BLAST results are available for this feature:
BLAST of DY258409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHF1_ARATH8.234e-8160.49SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CE03FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258409 ID=DY258409; Name=DY258409; organism=Citrus clementina; type=EST; length=1302bp
GAAAAGCATAACACAAGGCGAAACCAAAAAACTTTTCGCGGAAAGCGAAA
AAATTGTCCGCGTTTTCGACTATAAAACCAGCAAAAGCCCCCTCATCTTC
CTCCATTGACTCTGTTTCCAGTTCCCACTTCAAAAACAAAACCCCCAAAA
AAAAAAGTTTTTGTTATTCAAACTCAAATTTATTTCATCAATCAATTAAA
ATGGAGGGTGGTGGTACCGTGACATGCGGGTCGTGGATCAAGCGACCCGA
GAACGTGAATTTGGTTGTGTTGGGCAAGTCCAGCCGGGCCAGTTCATCCC
CCTCAGTGCTTGAAATTTTCTCCTTTGATCCCAAAACAACCTCTGTCTAC
ACTTCCCCTTTGGTTACTTATGTGTTTGATGAAAGCGAAGGCGATCCCAT
GACAATTGCTGTGAACCCGAGTGGTGATGACTTTGTTTGCTCCACAACTA
ATGGTGGCTGCAAATTGTTTGAGGTATATGGTGGAGCAACAGATATAAAT
TTACTGGCCAAGAAAATGCCTCCTCTCCAAGACGCTGGCCCACAAAAATG
CCTATCCTTCAGTGTGGATGGATCCAGATTTGCTGCTGGTGGAGTGGATG
GGCATCTCAGAATAATGCATTGGCCAAGCCTGCGCATCATTTTAGATGAA
CCAAAAGCACACAAGTCTGTGTTGGATATGGACTTTAGATTCAGAGTTTT
TGGCTACAACTTCTACTGATGGTTCTGCTAGAATATGGAAAACAGAAGAT
GGTGTTGCTTGGACTTTCTTAACTCGCAACTCGGATGAGAAGATTGAGTT
ATGCAGATTCTCCCAGGATGGGACAAACCATTTTTGTTTTGCACAGTCAA
GAGGTGATAAAGCTCTCCTTGCGGGTTATGAATATCGTACATGGAACAAA
TTGGCCCATAAAAAGGTGCTTAGAAAGCCTGGCTTCGTATTGTCTATCAG
CTTGGATGGGAAGTATCCTGGCTAGGGGAAACAAAAATGGGGACATCTGG
GGTTGCCAAAGGAAAAAAAAGGGAAATCATTCCTTGAAAAAAAAAGGCCA
CCCCGGGGTCCCCCCCTTGTGCTTATTTGAATTCCGGCCCCCCCCAGGGG
GGGGGGCTTTCCCCCCTCCAAAAAAAGGGGGAAATATGAATACCCCAACC
TCAACGGGTTCCGGGCAAAAATGGAAAAAAAGGGGAAAAATTTTCCCCCT
GTGGCTTTTTTACCCCTTTTTTTTCCGGCGCCCGCGGGGTGGGGTTTTTT
TATTTATTTTTTTTTCTCTCCTCAAAAAAAACACCCCTAATAACATTTTT
TT
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