DY258444

Overview
NameDY258444
Unique NameDY258444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258444_ssr218 microsatellite DY258444_ssr218:218..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.020e-15
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            VFHPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TDRA Y+STARSWT   AM
Sbjct:   73 VFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.271e-15
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            VFHPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TDRA Y++TARSWT   AM
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.060e-15
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            VFHPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TDRA Y++TAR+WT   AM
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.060e-15
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            V+HPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TDR+ Y+STARSWT   AM
Sbjct:   73 VYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.127e-14
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            VFHPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TD+  Y+STARSWT   AM
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.511e-14
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            VFHPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             HM+ TD+  Y+STAR+WT   AM
Sbjct:   73 VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.284e-14
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            V+HPN N+N  +CLDI KE+  PALT SK LL+ICSL+T             H++ TDR  Y+STA+SWT   AM
Sbjct:   73 VYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAM 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.186e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  188 VILSYWVFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            V+    VFHPN N+N  +CLDI K++  PALT SK LL+ICSL+T             H++ TD+  Y++ ARSWT   A+
Sbjct:   67 VVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.800e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            ++HPN N+N  +CLDI +++  PALT SK LL+ICS++T             H++ TDRA Y++TAR WT   A+
Sbjct:   73 IYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of DY258444 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.070e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  206 VFHPNNNNNDRLCLDIAKERCIPALTTSKALLAICSLITXXXXXXXXXXXXXHMHNTDRAPYDSTARSWTHTSAM 430
            ++HPN N N  +CLDI K++  PALT SK LL+ICSL+T             H++ TDR  Y++TAR WT   A+
Sbjct:   74 IYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148          
The following BLAST results are available for this feature:
BLAST of DY258444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBC28_ARATH1.020e-1556.00Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC2.271e-1554.67Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH5.060e-1553.33Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH5.060e-1553.33Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC10_ARATH1.127e-1453.33Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH2.511e-1452.00SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH4.284e-1450.67Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH6.186e-1344.44Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL1.800e-1244.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_YEAST3.070e-1245.33Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DC03FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258444 ID=DY258444; Name=DY258444; organism=Citrus clementina; type=EST; length=1329bp
TCTTTTTCGGGTTCTTAATTTTATATCCTTAATTTGTGTGTACTTATTTT
AAGAGTTATGCTATGTATTTTGGTCAAGTTACCGGAAACAATGTGAGTTG
ATTTAACTTGTCCCCTGAATGGTTGCTTTCGGTATTTATCATGTGGCCTG
TATGGTGGCAAAAGAAAAGTCTCCTTTTTACGACATAGTTATCCTTTCCT
ATTGGGTTTTCCACCCAAACAACAACAACAATGATAGACTCTGTCTTGAC
ATTGCCAAGGAGCGGTGTATCCCCGCTTTGACCACATCCAAGGCACTTCT
GGCAATTTGCTCCCTCATTACTGATCCAAACCCAATTGACCCTCCTGCGC
CTGACATCGCTCACATGCACAATACTGACAGAGCCCCATATGACAGTACT
GCTCGATCCTGGACCCACACCTCTGCCATGGACTTAGATGGGCTAGGCTG
CCCCCCCCCCACAACATTACATGGCTCGCGGCTCTATTCCCAAATACTAT
AAATCCCTTTGTTTCCTATATTAAAATACTATATTTGGCTTTGTTCCCCA
AATCGCTAAAAAGTCTTCCGTCGCGTTACTCCCCCCTTTACCCTTGCCCC
TCAACACTCACTTTCCTCCCACCCGCCAAAACAAAACACAAAACATAACC
CAAAACTCCCCCCTTCTCCCCCCCTTCTCTGTCAAATCAAAACACCCCTG
AAAATTCATCTTGTCCCACCAACCCGGCCACCCTTCCCCTATCTCTACTC
CTTCTTCCCTACCCCCCGCATACCCCTTTACATCACCGTACTATCTGCCC
CCACCCTTTTTCTGCAGACCCACCCCGCCATCCTCCCATTCAACCCGATC
CTAATTCCCCTCAAATACACTACAAAATACCCGACCCACCCAAACCTTTC
CCCCATCCCCTTCTACCCTCCCACTTCCTCACATCCACATCACACACGCA
CCTTTCTCTTATCATCCCCCAACTTAATACTCCCCCCCCGCACCACTACC
AAGCACCACTCCTCACCAAACGCCGTCACGCTCCCCTTTTGTCACCGCCC
GCACCCACTCCTCAACCACCCCACTCCACACCCCCACCCTACCCCCCCCC
CTCTCATTCCACCTCCTCCATCAACCGACACTCACCCCCTCCCGCTCCTC
CCACTCATCCCCGTCCCCACGACACGACACACCTGCTCACCATCATTCCT
CCCCTCCTCCCCCCCACCTCACCCACCACCCTCCCCGCTCCCTTCCCTAC
CCTCTCCCTCTCCCCCCTTTTCCCTCTTCACTCCTCCCCTCACCCAATTC
CATCTCCTACATTCCTCCTATCTCTTCAC
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