DY258464

Overview
NameDY258464
Unique NameDY258464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258464_ssr1254 microsatellite DY258464_ssr1254:1254..1265. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1133 contig Ccv1_Contig1133:1..1305. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.139e-46
Identity = 92/117 (78.63%), Postives = 105/117 (89.74%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIAL--APKAMEKSKIR 422
            VSMD APYLRKV+L +YTNYGELSSALEKMF+ FT+GQCGS+ A G++MLSE+KLKDLL+G +YVLTYEDKDGDWMLVGDVP EMFID CK+LKIMKG DAI L  AP+AMEKSK+R
Sbjct:  221 VSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.054e-45
Identity = 88/113 (77.88%), Postives = 101/113 (89.38%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            VSMD APYLRKV+L TYT+Y +LSSALEKMFSCFT+GQCG H A GRE +SE KLKDLLHGSE+VLTYEDKDGDWMLVGDVP E+F ++C++LKIMKGSD+I LAP A+EKSK
Sbjct:  204 VSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSK 316          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.350e-41
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSM+ APYLRK++L TY +Y ELSSALEKMFSCFTIGQ GSH   GR+ L+ES+L DLL GSEYV+TYEDKD DWMLVGDVP EMFI SCK+L+IMK S+AI LAP+ MEK + RN
Sbjct:  190 VSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.394e-40
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRKV+L  Y +Y ELS ALEKMFS FTIG CGSH   G   ++ESK+ DLL+GSEYV TYEDKDGDWMLVGDVP EMF++SCKRL+IMKGS+AI LAP+AMEK K R+
Sbjct:  165 VSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.241e-38
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRKV+L  Y NY ELS ALEKMFSCFT+G   S+   GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVP  MF DSC+RL+IMKGSDA+ LAP+A +KSK RN
Sbjct:  151 VSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.883e-36
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRK++L  Y  Y +LS+AL KMFS FTIG  G      ++ ++ESKL DLL+GS+YV TYEDKDGDWMLVGDVP EMF+DSCKR++IMKGS+AI LAP+A+EK K R+
Sbjct:  123 VSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.631e-34
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSKIRN 425
            VSMD APYLRKV+L  YT+Y +LS AL KMFS FT+G  G+      + ++ESK+ DLL+ SEYV +YEDKDGDWMLVGDVP  MF++SCKRL+IMKGS+AI LAP+AMEK K R+
Sbjct:  115 VSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.131e-34
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    9 WQPHQ*FLRNYTVXXXXXXXXXXVSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEKSK 416
            W P + F +N             VSMD APYLRK+++  Y +Y ELS A + MF+ FTIG+CGSH+    ++   +KL+D L   EYV TYEDKDGDWMLVGDVP EMF++SCKRL+IMKGS+AI LAP+A+EK K
Sbjct:  104 WPPVRSFRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQ----QLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCK 232          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.381e-33
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAI--ALAPKAMEKSKIRN 425
            VSMD APYLRKV+L  Y +Y ELS +L KMFS FT G C S     ++ ++ESKL DLL+ S+YV TYEDKDGDWMLVGDVP EMF++SCKRL+IMKG +AI   LAP+AM K K R+
Sbjct:  128 VSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of DY258464 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.804e-33
Identity = 72/111 (64.86%), Postives = 89/111 (80.18%), Query Frame = 3
Query:   78 VSMDRAPYLRKVNLTTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPREMFIDSCKRLKIMKGSDAIALAPKAMEK 410
            VSMD APYLRKV+L  Y +Y +LS AL KMFS FT+G  G+      + ++ESKL +LL+ SEYV +YEDKDGDWMLVGDVP EMF++SCKRL+IMKGS+A+ LAP+AMEK
Sbjct:  129 VSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
The following BLAST results are available for this feature:
BLAST of DY258464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IAA9_ARATH4.139e-4678.63Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH2.054e-4577.88Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH2.350e-4172.41Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA30_ORYSJ3.394e-4072.41Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA21_ORYSJ9.241e-3868.10Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA16_ARATH3.883e-3665.52Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA14_ARATH1.631e-3464.66Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA11_ORYSJ2.131e-3455.15Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
AUX28_SOYBN1.381e-3363.56Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA7_ARATH1.804e-3364.86Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DF04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258464 ID=DY258464; Name=DY258464; organism=Citrus clementina; type=EST; length=1305bp
TAAGACACTGGCAGCCACATCAATAATTCCTGAGGAATTACACCGTTGCC
GCTGCTCTGGAGCTCTTTTTATTACTAGTTAGCATGGACAGAGCTCCTTA
TTTGAGGAAAGTAAATTTAACAACATACACCAATTATGGGGAACTATCTT
CTGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCA
CATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAAGATCT
TTTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACT
GGATGCTCGTTGGGGATGTGCCGCGGGAGATGTTTATTGATTCATGCAAG
CGATTAAAGATCATGAAAGGTTCTGATGCCATTGCCTTAGCTCCCAAGGC
AATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGG
TGCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAT
AAGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGCGGTTCAG
TTGTGTATCCTGTTTGTTAACATGAGGCTTGCGTTACTTGTTTACGTTCG
GAAGAAGTCTATGTTTATGATATGATTGATGTCAAACCCTGTTGAAACAC
AAACAAATTTAGGATTCGTGGAAGTACACATCTATCTAGTGACTGGGATC
TTAATAAAAAAATAAAAAAACAAAAAAAAACCCCACTCTCTTGCACAACT
TTGGCATTAAAAGAAAGGATCGCTAAACAATATTCCTGACACACACCCCC
CCCTCTCCAACCAACTTCAAAATCCTAATTTGCCTCACCACGAACCAACC
CCAACCCCGGCTCCCAATTAACTAGGCCAAACACTCATACCCCGCAACTC
CGCGCCCTGGTCCCCAATATCAGAACTACAACTTCCCCCTCAACAAACAC
ACTCCACCCCTAACCCCAAACACCCCTCCTCCCTTTCCACTGTCTTCTCC
CCTAATTTTTCTCCCTCCACTTCCCCCCCCCCTCACCCCCCCGACATAAC
TTCGCTTTCATATTGTCTAGGAATCACCCACATCGCGCAGCACTTTCCCA
CTACGACCACCTACCTCCTCCACATCCTACCCCGCTCTTCACCTCCTATA
CCCTCCTCCCCCTACCCCACTACACTCACTTTACCTATTTATATTCCCAC
CCCACTACACACCCAGTCTTACTAATNAAACCCGTCTCCCAAAATACATT
CTCCCACCACCACCACCTACCCTTCTTACGCANACCGTCAGTACGACCAG
TGACC
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