DY258478

Overview
NameDY258478
Unique NameDY258478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1291
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258478_ssr753 microsatellite DY258478_ssr753:753..764. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258478_ssr881 microsatellite DY258478_ssr881:881..890. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7625 contig Ccv1_Contig7625:373..1663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258478 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.367e-25
Identity = 73/174 (41.95%), Postives = 90/174 (51.72%), Query Frame = 2 
Query:  152 SPLSMQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 649
            SP  +QN  K     S PT    + S     TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   17 SPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
[Close]
BLAST of DY258478 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 6.348e-23
Identity = 77/196 (39.29%), Postives = 94/196 (47.96%), Query Frame = 2 
Query:   80 VLNAKCFXXXXXXXXXXXGATKPTS-PLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 652
            VLN KC             + KPTS P+S+   P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+NILQPALNQ+N+MRS+
Sbjct:   11 VLNTKCLTLNTNKTTST--SPKPTSKPISLS--PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199
The following BLAST results are available for this feature:
BLAST of DY258478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH1.367e-2541.95Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL6.348e-2339.29Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1DH02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258478 ID=DY258478; Name=DY258478; organism=Citrus clementina; type=EST; length=1291bp
CTTGATTATCGAACACTATGCCTTAAACAAGAATCATCAATCATCAACAT
CAATGGCAGCAGCAATGGCTACAACGGCTGTGCTCAATGCCAAGTGCTTC
AGCATCAGCTCCCCCAAAAGCAGCATCAAGCCTGGAGCCACAAAACCCAC
TTCCCCGCTCTCCATGCAAAACCTCCCAAAAGGCCTCACGGTCTCATCAA
AACCAACCGATTCATCATCACTAGCAGCCGGCACCGCCATTGCCGGAGCA
ATCTTCTCAACTCTGAGCTCATGCGATGCTGCTTTTGCCGCACAACAAAT
AGCAGAAATAGCGGAAGGTGACAACCGAGGGTTAGCACTATTGCTCCCAA
TCATCCCGGCCATAGCCTGGGTGCTGTTCAACATTCTGCAGCCAGCACTC
AACCAAATCAACCGCATGCGCAGCACCAAGGGTGTGATCATTGGGCTCGG
GCTTGGTGGGTTGGCCGCAACAGGGCTGATGTCTATGCCACCCCATGCAT
CGGCTGCGGCCAGTGAAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGC
AGGGGTCAGCTTCTGCTTATTGTTGTTACTCCTGCTATTCTCTGGGTGCT
TTACAACATTTTGCAGCCGGCTCTGAACCAAATCAACAGGATGAGGTCCG
AGTGAGAGATTAATTCTGTTGGAATAGGTGTAGTACAATGAATTTTTCTT
GTAATTGCACCTCACGTTGTCAATGAACTACCTTCTTCTTTTTTTTTGTG
TATGTGTGTGTGTGTCTTGGAACAATTTTCATTTAACCGGTTTGATTAAA
GTGTAATTATGGGGTCAGAAGTGAATATGTTATCGGCCGTGAAGCACTTA
CTGGTAAAATCTTGATTTGTGTATTGTGTAATATATATATAGCCCAATGT
AAATTATAAACTGGTGGTGAAAGAAAAAAAAAAAAAAAAAAAAACCCACT
TTCCTTGAAAAAATTTGGCAATATAAAAAAAACTTTGTTTTTAAATTTGT
TGCAACCAAAAAGGTCCATATACAATAAAAAAAAAAATCTTAATTTTCCA
CCCCACCGAAAATCCCCCCAAAAGGGAACCAAAAAAAATGGGCCCAAAAC
TTTTTTCCCGGGCCCCCTTGGCCCCCCGGGTCCCAAAAACCCCCTAAATT
TTTTTCTTCGCCCAAAAAAAAAAAAAATATTTTCCCTCGTGGTTTAAAAA
AAACACCCCCCCCCCCGACACATACAGAAAAAAAAAAGCCGCGCTCCTTA
TTTTTTTTTTTCTTTCACGACGGGGAATTCTTTTTCCTCCC
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