DY258487

Overview
NameDY258487
Unique NameDY258487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14014 contig Ccv1_Contig14014:972..1753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258487 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.232e-25
Identity = 73/163 (44.79%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  162 MQLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPELEEDRKPNINISRQEVALGMPPHQGSPAPMMNDLLHMDTSDSVPRLQ-TDSSCSEHVLSPEITCDKEVQSMPKWNDLGNALNDDYN--QFNFNYMDTNSFQDDPFGPQVQYQMDQLSPYQDLFMILQKPF 641
            ++LDDWVLCR+YNKKG  E+  P      G   +EE  KP +     E+ +  PP Q S      +  + DTSDSVP+L  TDSSCSE V+SPE T   EVQS PKW D     ND+ N   F FNY+D     D+ FG       +Q+ P QD+FM +QKP+
Sbjct:  145 LRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIMEE--KPKVT----EMVMPPPPQQTS------EFAYFDTSDSVPKLHTTDSSCSEQVVSPEFT--SEVQSEPKWKDWSAVSNDNNNTLDFGFNYIDAT--VDNAFGG--GGSSNQMFPLQDMFMYMQKPY 289          
BLAST of DY258487 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.734e-14
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  162 MQLDDWVLCRLYNKKGRMEKHYPSDQKSIGFPELEE--DRKPNINISRQEVALGMPPHQGS--PAPMMNDLL--HMDTSDSVPRLQTDSSCSEHVLSPEITCDKEVQSMPK 476
            ++LDDWVLCR+YNKKG +EK   +   + G         RKP + ++    A+  PP Q      P   DL   +   SDS+PRL  DSSCSE VLSPE  C  EVQS PK
Sbjct:  146 LRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVN---AAVSSPPEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFAC--EVQSQPK 251          
The following BLAST results are available for this feature:
BLAST of DY258487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NAC2_ARATH4.232e-2544.79NAC domain-containing protein 2 OS=Arabidopsis tha... [more]
NAC48_ORYSJ5.734e-1445.05NAC domain-containing protein 48 OS=Oryza sativa s... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AA10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258487 ID=DY258487; Name=DY258487; organism=Citrus clementina; type=EST; length=782bp
CAAAAGCGTGAGGCATCTTATGCGAACCCGGTGGCCCACGAATAAGCATA
ATGCAGCACATTGTATATCGAATGATGGGGGCATTGCCTTGCATCATTTT
GTAAGAAATATCAACAACCCTTTGTGTTAATTGCTGACTAACAATTGTTA
CTATTTTGATGATGCAGCTTGACGATTGGGTATTATGTCGATTGTACAAC
AAGAAGGGGAGGATGGAAAAACATTACCCCAGCGATCAAAAATCAATTGG
ATTCCCAGAACTGGAGGAGGATCGGAAACCAAATATTAACATTTCACGTC
AAGAGGTAGCATTAGGAATGCCTCCACATCAGGGATCGCCTGCGCCAATG
ATGAATGACCTATTACATATGGATACGTCGGACTCGGTGCCCCGGTTGCA
GACGGATTCGAGTTGCTCCGAGCACGTGTTGTCGCCGGAGATCACGTGCG
ATAAGGAGGTCCAAAGTATGCCCAAATGGAATGATCTAGGCAATGCCTTG
AATGATGATTATAATCAGTTCAATTTCAACTACATGGACACTAATAGCTT
CCAAGACGACCCTTTTGGCCCGCAAGTTCAGTATCAGATGGATCAGTTAT
CACCCTATCAAGACCTTTTTATGATTCTGCAGAAGCCATTTTAAGTTCAA
TACATCGTAGTATGCTAGGTCCTGTATTATATAATCCTTTTGTAAACCAC
AATTGTAGGGCATTCTTATTCGTGCAAGATTGTAGAAGAAATTTTTTTAA
TATATGAACAACAAAAAAAGAATGACTTCACT
back to top