DY258498

Overview
NameDY258498
Unique NameDY258498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258498_ssr734 microsatellite DY258498_ssr734:734..755. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1144 contig Ccv1_Contig1144:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.638e-89
Identity = 162/214 (75.70%), Postives = 184/214 (85.98%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGD-KPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            F  +  + S+   VLA DPDTLQD+CVAD +SG+KVNGF CK  +NITA DFFFAG+ KP VVNN+VGS VT ANVEKI GLNTLGVSL+RIDY  GGLNPPHTHPRATE+IFVLEGELDVGFI+TA+KL +KTVKKGE++VFP+ L+H+QKNN   KPASVISAFNSQLPGTQSIAATLFTATP +PD+VLT  FQ+GTKEIEKIKSK APKK
Sbjct:    6 FGFFFTLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKFAPKK 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.641e-82
Identity = 147/198 (74.24%), Postives = 171/198 (86.36%), Query Frame = 1
Query:   49 AVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            A DPD LQD+CVAD +S VKVNGFACK  A +T DDF+F GLA  G  NN+ GS+VT ANVEK+PGLNTLGVS+SRIDY  GGLNPPHTHPRATEM+FVL+G LDVGFI+TA+KL +KT+  G+++VFP+ L+HFQKNNGD PA+VISAFNSQLPGTQS+A TLF A+P VPD VLTKAFQVGTKE+EKIKS+LAPKK
Sbjct:   25 AGDPDLLQDICVADLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSRLAPKK 220          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.064e-80
Identity = 140/204 (68.63%), Postives = 173/204 (84.80%), Query Frame = 1
Query:   31 IIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            +I  + A DPD LQD+CVAD S G K+NGF CK++ NIT  DFFFAG++KP V+N+++GS VT ANVEKIPGLNTL VSL+RIDY  GGLNPPHTHPRATE+++VLEGEL+VGFI+TA+KL +KT+K GE++VFP+ LVHFQKNNG  PASV+SAFNSQLPGT S+AATLF A P +P++VLTK FQVG+K ++KIK +LA KK
Sbjct:   16 MITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKERLATKK 219          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.390e-80
Identity = 143/209 (68.42%), Postives = 173/209 (82.78%), Query Frame = 1
Query:   16 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            L++ +      A D D LQD+CVAD +S + VNGFACK ++N+TA+DFF   L K G  NN+ GSLVT ANV++IPGLNTLGVS++RIDY  GGLNPPHTHPRATEM+FVLEG+LDVGFI+T ++LI+KT+ KGE +VFPK LVHFQKNNG +PA+VI+ FNSQLPGT +I  TLF ATPPVPDNVLTKAFQ+GTKE++KIKSK APKK
Sbjct:    9 LVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKFAPKK 217          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.758e-75
Identity = 138/210 (65.71%), Postives = 167/210 (79.52%), Query Frame = 1
Query:   13 YLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            +LL  SI     A D D LQDVCVAD  S VKVNGF CK   N TA DF    ++KPG  NN  GS+VT ANVE++PGLNTLGVSL+RIDY  GG+NPPHTHPRA+EM+FV+EGELDVGFI+TA+ L+SK + KGE++VFP+ LVHFQKNNG+ PA+VISAFNSQLPGTQSI  TLF A+PPVPD+VL + FQ+ T+++++IKSK AP K
Sbjct:   20 FLLAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCK--TNFTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKFAPVK 227          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.066e-72
Identity = 134/210 (63.81%), Postives = 162/210 (77.14%), Query Frame = 1
Query:   13 YLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            +L   SI     A D D LQDVCVAD  S VKVNGF CK   N TA DF    ++KPG  NN  GS VT ANVE++PGLNTLGVSL+RIDY  GG+NPPHTHPRA+EM+FV+EGELDVGFI+TA+ L+SK + KGE++VFP+ LVHFQKNNG  PA+V+SAFNSQLPGTQSI  TLF A+P VPD+VL + FQ+  +++++IKSK AP K
Sbjct:   20 FLFAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCK--TNFTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKFAPAK 227          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.819e-72
Identity = 134/203 (66.01%), Postives = 163/203 (80.30%), Query Frame = 1
Query:   19 LIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSK 627
            ++ ++ A  LA DPD LQDVCVAD +S VK+NGF CK  AN+TADDFFFAGL  PG  NN  GS VTAANV+  PG+NTLGVS++RIDY  GG NPPHTHPRATE+IFVLEG L+VGFI+TA+KL +KTV  GE++VFP+ LVHFQ+N G  PA+VI+AFNSQL GTQ+IAATLF A PPVP +VL KAF+V   +++ IK+K
Sbjct:   14 VVLALAAPSLAGDPDMLQDVCVADLASPVKLNGFPCK--ANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAK 214          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.642e-71
Identity = 133/218 (61.01%), Postives = 167/218 (76.61%), Query Frame = 1
Query:    1 LFSTYLLIFSIIAGV-LAVDPDTLQDVCVADTSS---GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            + +T+ ++F  +A   LA DPD LQDVCVAD  S    +++NGF CK   N+TA+DFFF GL K G   N+VGS+VTAA+VE +PGLNT+GVS++RIDY   GLNPPHTHPRATE+IFV+EG LDVGF++TA+KL ++TV KGE++VFP+ LVHFQKNNG+ PA  I+A NSQLPGTQSIAA LF A PP+P + L +AFQV    +E IKSK  P K
Sbjct:    5 ILATFAVVFMALAATSLAGDPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFVPPK 222          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.153e-69
Identity = 124/180 (68.89%), Postives = 152/180 (84.44%), Query Frame = 1
Query:   10 TYLLIFSIIAGVLA--VDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLF 543
            T LL+ + ++  ++   DPD LQD+CVAD  SG+K+NGF CKD+A +T+ DFF  GLAKPG+ NN+ G+LVT ANV  IPGLNTLGVSLSRIDY  GGLNPPHTHPRATE++FVLEG LDVGF++TA+KLIS+++KKG+++ FPK LVHFQKNNGD PASVI+AFNSQLPGTQS+ ATLF
Sbjct:    7 TLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
BLAST of DY258498 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.081e-68
Identity = 124/213 (58.22%), Postives = 164/213 (77.00%), Query Frame = 1
Query:    4 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMIFVLEGELDVGFISTADKLISKTVKKGEIYVFPKALVHFQKNNGDKPASVISAFNSQLPGTQSIAATLFTATPPVPDNVLTKAFQVGTKEIEKIKSKLAPKK 642
            F+T+L++   +  V     + LQDVCVAD S+ VKVNG+ CKDS  IT +DF+F GLA     N S GS+VT ANVEK+PGLNTLG+S+SRIDY   GLNPPH HPRA+E+IFVLEG+L VGF++TA KLI+K + KG+++ FPK L+HFQKN  + PASV++AF+SQLPGTQS+ A+LF A   +PD++L K+FQ+  K+++KIK + APKK
Sbjct:    4 FATHLVVVVTMLFVAMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA---LPDDILAKSFQLKHKQVKKIKLRYAPKK 213          
The following BLAST results are available for this feature:
BLAST of DY258498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL24_ARATH1.638e-8975.70Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL52_ORYSJ5.641e-8274.24Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL22_ARATH1.064e-8068.63Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
RHRE_PEA1.390e-8068.42Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
NEC1_NICLS1.758e-7565.71Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
NEC1_NICPL1.066e-7263.81Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL11_ORYSJ1.819e-7266.01Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL13_ORYSJ7.642e-7161.01Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH7.153e-6968.89Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL25_ARATH2.081e-6858.22Probable germin-like protein subfamily 2 member 5 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2AC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258498 ID=DY258498; Name=DY258498; organism=Citrus clementina; type=EST; length=849bp
CTTTTCAGCACATACTTGCTTATTTTCAGCATCATAGCTGGAGTCCTTGC
AGTCGATCCTGACACGCTCCAGGATGTTTGTGTGGCCGACACCTCTTCAG
GAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGCGCAAATATTACAGCA
GATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGGAGTAGTTAACAATTC
AGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAAAAATTCCAGGCCTCA
ACACACTAGGCGTGTCCCTGTCCCGCATCGACTACGAAGCCGGTGGCCTG
AACCCACCTCACACTCACCCACGTGCCACCGAAATGATCTTTGTGCTCGA
AGGTGAATTGGATGTAGGATTCATCAGCACCGCCGATAAATTGATCTCAA
AAACTGTCAAGAAAGGCGAAATCTATGTGTTCCCCAAAGCTTTGGTTCAT
TTTCAGAAGAATAATGGCGACAAGCCGGCTTCAGTTATTTCTGCTTTCAA
CAGTCAATTGCCTGGAACTCAATCCATTGCTGCCACTTTGTTTACTGCCA
CACCTCCCGTGCCGGACAATGTTTTGACAAAAGCTTTTCAAGTTGGAACC
AAAGAGATTGAGAAAATTAAGTCCAAGCTTGCACCAAAGAAAACCTGAAG
ACGGGTTTGCGATTACAGGAGAAATGATCATCCGCTTCTTTCTTTTCTTT
CGAGTTTTGAAGAAAGATTCCGGTTCGGATTTGATATATATATATATATA
TATATACATATGGAGTCAATGAAATTGAATATGCATTTGTAATGATCTTT
TATGTTATGCTCATACTTCCTAATTCATATGAAAAAATAATTTATTTTG
back to top