DY258499

Overview
NameDY258499
Unique NameDY258499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15449 contig Ccv1_Contig15449:43..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_CHICK (Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.928e-52
Identity = 95/165 (57.58%), Postives = 129/165 (78.18%), Query Frame = 1
Query:  109 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 603
            +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct:   12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_RAT (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.000e-50
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  109 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 603
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_MOUSE (Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.000e-50
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  109 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 603
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_DICDI (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.706e-50
Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 1
Query:   85 GDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ-GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 603
            G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DFVELPD  +  LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct:    9 GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_HUMAN (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.911e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = 1
Query:  109 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 603
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: BET3_SCHPO (Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe GN=bet3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.349e-46
Identity = 94/178 (52.81%), Postives = 128/178 (71.91%), Query Frame = 1
Query:   85 GDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 615
            G+ ++  V++VNAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLAK+   RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D  Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct:    7 GEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: BET3_YEAST (Transport protein particle 22 kDa subunit OS=Saccharomyces cerevisiae GN=BET3 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.731e-40
Identity = 84/180 (46.67%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   85 GDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 615
            G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D  + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct:   14 GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPC3L_MOUSE (Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 80/163 (49.08%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  112 RVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 597
            ++N +LF LTYGA V QL  D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC  + E   +IA+V FKM+LG+T +V+  ++     S+IL  NPL +FV ELP     L YCN+L G+IRGALEMV +   VT+++D L+GD   E+ +  LK++ E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPC3L_HUMAN (Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.657e-37
Identity = 80/163 (49.08%), Postives = 115/163 (70.55%), Query Frame = 1
Query:  112 RVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 597
            ++N +LF LTYGA V QL  D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC  + E  ++IA+V FKM+LG+T +V+  ++     S+ILE NPLV+FV ELP     L YCN+L G+IRGALEMV +  +VT+++D L+GD   E+ +  LK+  E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175          
BLAST of DY258499 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEBR (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.190e-27
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  100 ANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 510
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LGV+AT S+W +      I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   10 ADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMIAGAIRGALEAVHFK 149          
The following BLAST results are available for this feature:
BLAST of DY258499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CHICK6.928e-5257.58Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_RAT1.000e-5056.97Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_MOUSE1.000e-5056.97Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_DICDI1.706e-5058.62Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_HUMAN2.911e-5056.36Trafficking protein particle complex subunit 3 OS=... [more]
BET3_SCHPO4.349e-4652.81Transport protein particle subunit bet3 OS=Schizos... [more]
BET3_YEAST2.731e-4046.67Transport protein particle 22 kDa subunit OS=Sacch... [more]
TPC3L_MOUSE5.694e-3849.08Trafficking protein particle complex subunit 3-lik... [more]
TPC3L_HUMAN1.657e-3749.08Trafficking protein particle complex subunit 3-lik... [more]
TPPC3_CAEBR1.190e-2746.43Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258499 ID=DY258499; Name=DY258499; organism=Citrus clementina; type=EST; length=782bp
GAAAAAAAACCTATAAATTCTGGTGATCAAATTTAGATATCGCTTTGCAG
AGATCTCATAATGGCTCCCGTTGGTCCTCGATCCGGTGACGCAATCTTCG
CCAACGTGGAACGCGTGAATGCTGAGCTGTTTACATTAACTTACGGCGCC
ACTGTGCGTCAGCTGCTCACGGATCTGGAGGAGGTTGAGGAAGTTAACAA
ACAGCTTGATCAAATGGGCTATAATATTGGGATTCGACTGATTGATGAGT
TTCTAGCAAAATCTAATGTCACTAGGTGTGTAGACTTCAGGGAGACTGCT
GAAGTGATTGCAAAGGTGGGTTTCAAAATGTTTTTAGGGGTTACTGCAAC
CGTGAGCAACTGGGATGCTGATGGGACATGTTGCAGTATAATTTTGGAAG
ATAATCCTCTGGTGGATTTTGTTGAGCTTCCTGATACTTGTCAAGGCCTT
TATTATTGCAACATCTTGAGTGGAGTCATTAGAGGGGCCCTAGAGATGGT
TTCAATGAAAACTGAAGTCACTTGGATCCGCGATGTGCTTCGAGGGGATG
ATGCATATGAGCTGCAGGTGAAACTTCTGAAACAAGTCCCAGAAGAATAT
CCATACAAGGATGATGAGTAATATCCTGTCTTGGTGCCTGATGCGGACAT
ACGGAGTTTACATTCTTGCACTTCATTTTCCCTAAAGAATATCAGTTTTA
ACAGCTTGTTCTCTGTATGAATATTCACTTGGGAGAAACTTTGAATAGGT
TTTCCGTTTTCAAATGCATGGTAATGCTTTCA
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