DY258535

Overview
NameDY258535
Unique NameDY258535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6388 contig Ccv1_Contig6388:372..1488. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.729e-21
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  415 TYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPAFISQLMALL 807
            T + K G++  +   F+ V+   +DALV+PGGRAPE + LNE  +++ +      KPVASICHG QIL +AGVL+G+K T+YP +K +++ AG  W++ + +     DGN VS        A++ + + LL
Sbjct:   39 TITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVV----VDGNWVSSRVPADLYAWMREFVKLL 165          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.417e-20
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  427 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 753
            K G+   +   F+ VD   +DALV+PGGRAPE + LNE  +A+ K   E  KPVASICHG QIL +AGVLKG+K T+   ++ +V  AGA W++ + +     DGN VS
Sbjct:   43 KHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEVV----VDGNWVS 147          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.417e-20
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  427 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPAFISQLMALL 807
            K G+   +   FE V+   +DALV+PGGRAPE + LNE  + + K      KPVASICHG QIL +AGVL+G++ T+YP +K +++ AG  W++ + +     DGN VS        A++ + + LL
Sbjct:   43 KHGYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEVV----VDGNWVSSRVPGDLYAWMREFVKLL 165          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.015e-18
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  427 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVS 753
            K G++  +   F+ V+   +DALV+PGGRAPE + LNE  + + +      KPVA+ICHG QIL +AGVLKG+K T+Y  ++ +++ AG  W++ + +     DGN VS
Sbjct:   43 KHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREVV----VDGNWVS 147          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.123e-17
Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  427 KPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPAFISQLMALL 807
            K G+       +E V V  Y  LV+PGG++PE + +NE  + +VKDF+E  KPVA+ICHG Q+L +A  +KG++ T++  ++ +++ AGA + E  P+     DGN+++       P F  +L+ +L
Sbjct:   43 KKGYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALY-EDRPV---VVDGNVITSRMPDDLPYFCGELIKIL 165          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: GS18_BACSU (General stress protein 18 OS=Bacillus subtilis GN=yfkM PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.588e-14
Identity = 47/149 (31.54%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  361 KKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPAFISQLMALL 807
            K+AG    T +   +G     ++     T+ A+ + V+ S +DAL++PGG +P+ L  ++  +   K FM  KKPV +ICHG Q+L  A  L G+K T Y ++++++  AGA  ++ + +        LV+       PAF  + +ALL
Sbjct:   26 KEAGHEL-TVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRTPDDIPAFNRESLALL 170          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.380e-14
Identity = 46/150 (30.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  361 KKAGDSCPTAVHDFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPIDRCFTDGNLVSGAAWPGHPAFISQLMALLG 810
            +KAG    T +    G     +K   + T+  + + V  + +DAL++PGG +P+YL  +   +   +DF+ + KPV +ICHG Q+L +A V++G+K TA   + ++V  AGA + + + +        LV+       PAF  + + LLG
Sbjct:   26 RKAGHEVIT-IEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPAFNREALRLLG 171          
BLAST of DY258535 vs. ExPASy Swiss-Prot
Match: YRAA_BACSU (Putative cysteine protease yraA OS=Bacillus subtilis GN=yraA PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.285e-13
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  397 DFEGDQTYSEKPGHNFTLTANFESVDVSGYDALVVPGGRAPEYLALNENVIALVKDFMEAKKPVASICHGQQILAAAGVLKGKKCTAYPAVKLNVLLAGASWLEPDPI 720
            D E  +  + K G    +      VD S +DAL++PGG +P+ L  ++      K F+E KKPV +ICHG Q+L    +LKGK  T Y +++ +++ AGA++ + + +
Sbjct:   36 DLEAGKEVTGKHGEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAEVV 143          
The following BLAST results are available for this feature:
BLAST of DY258535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFPI_PYRHO3.729e-2139.69Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRKO1.417e-2047.71Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
PFPI_PYRAB1.417e-2040.94Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRFU1.015e-1842.20Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
Y1281_ARCFU1.123e-1736.22Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
GS18_BACSU2.588e-1431.54General stress protein 18 OS=Bacillus subtilis GN=... [more]
YHBO_ECOLI3.380e-1430.67Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
YRAA_BACSU1.285e-1334.26Putative cysteine protease yraA OS=Bacillus subtil... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BB01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258535 ID=DY258535; Name=DY258535; organism=Citrus clementina; type=EST; length=1117bp
AACAATTGCTTCCATTTGCCATGGGCAGTTAATATTGGCAGCTGCTGATG
TGGTCAAAGGTCGAAAGTGCACAGCATATCCTCCTGTGAAACCTGTGCTT
ATTGCCGCTGGTGCTTCTTGGATTGAGCCAGAGACCATGGCAGCTTGTGT
TGTTGATGGTAACATCATTACTGGGGCTACCTACGAGGGTCATCCTGAGT
TCATTCGGCTTTTTCTTAAAGCACTGGGTGGCACCATAACTGGTTCTGAT
AAGAGAATTCTTTTTCTTTGTGGGGATTACATGGAAGATTATGAGGTAGC
TGTTCCTTTTCAGTCCCTTCAGGCACTAGAGTGCCATGTTGATGCTGTAT
GCCCCAAAAAAAAAAGGCTGGGGACTCCTGCCCCACTGCTGTTCATGATT
TTGAAGGTGATCAAACTTACAGCGAGAAGCCAGGCCATAATTTCACCCTA
ACTGCGAACTTTGAAAGTGTTGATGTGTCGGGCTATGATGCTCTTGTTGT
CCCTGGAGGTCGAGCACCAGAATATCTGGCACTAAATGAAAATGTAATTG
CATTAGTGAAGGATTTTATGGAGGCGAAGAAACCAGTTGCATCCATTTGC
CATGGCCAGCAGATTTTAGCTGCAGCTGGTGTTCTCAAGGGAAAGAAATG
TACTGCGTACCCTGCTGTGAAGCTTAACGTCCTCTTGGCAGGAGCTTCGT
GGCTAGAACCTGATCCAATCGATCGCTGCTTTACTGATGGTAATTTGGTT
AGCGGAGCTGCTTGGCCGGGCCACCCTGCGTTCATCTCTCAGTTGATGGC
ATTGCTCGGTATCCAGGTTCTCTTCTATTTGTTCAGTAGATGTTTGGTTA
CCGGAAGCTGCTTGTCTTTACTGTTTTATCAACTTGTTTGGTTGCTTTTT
TACCAAATGATAAAATAGTGTAAAATAAATGGTTCAGTTGAACTGGGATG
GGGAAATAAACTTCTTGTGCCATTTTGCTTTGGGGGGAACTTTCCTTTGA
AATTCTAAGGGCCCAAACCCGGTACTCAAAAACCTTAATTATTTTGCCCT
TTACTGGTTTTTATCCTCCTCTTTTTCCGGGTTAAAGGAAAAAAAAAAGG
AAAACCCCTTTTTTTCT
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