DY258541

Overview
NameDY258541
Unique NameDY258541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1260
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1161 contig Ccv1_Contig1161:1..1260. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258541 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.238e-41
Identity = 91/263 (34.60%), Postives = 152/263 (57.79%), Query Frame = 2
Query:   77 NAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL--YNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYIN-TDDYEGGFKPSDIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFENCLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIVQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADEHFPQLTAHLQLIDVLNKVL 853
            + K+ GSGK +++ A GFG DQS+W+ + P   + +RV+ FD++ SG      H  L  Y+  +Y + + +A D++ + E  DLK T+F+GHS+  +IG +AS+++PELF  L+++G SP Y+N   +Y GGF+   +  L+  +E NY  WA+ F   V++  D P + E+ E+         A   AK  F+SD RE L KV  P  I+Q ++D + P +V  YM + +   S+++ +EA  H P ++   + I ++   L
Sbjct:   10 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSG------HSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP-YSSLKQMEARGHCPHMSHPDETIQLIGDYL 265          
BLAST of DY258541 vs. ExPASy Swiss-Prot
Match: BIOH_VIBFM (Carboxylesterase bioH OS=Vibrio fischeri (strain MJ11) GN=bioH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.170e-11
Identity = 60/261 (22.99%), Postives = 112/261 (42.91%), Query Frame = 2
Query:   92 GSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSLYNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYINTDDYEGGFKPSDIENLISNVETNYASWASSFPRLVVDTKDAPSVEKFENCLKR------MRHEFALPLAKTVFYS-DEREILDKVETPCTIVQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADEHFPQLTAHLQLIDVLNKVL 853
            G G + LVL HG+G + ++W   +  LSQHYRV   D      +    H +      +       D+++  +     K   ++G S+ G+I   A++  PE   +LI + +SP +     +  G KP  +      ++T++      F  + +    +P+ ++    +K+      M  + AL     +    D RE + ++  P   +    D +VP  VA+YM E M   + + + E   H P ++ + + I  L   L
Sbjct:   11 GEGSD-LVLIHGWGMNGAVWQTTSEKLSQHYRVHTVD------LSGYGHSAELGSADF-------DEMVKQVLAQAPKKAAWLGWSLGGLIATKAALTSPERVSQLITVASSPCFSAEKGWR-GIKPLILSQFTEQLKTDFTLTVERF--MALQAMGSPNAKQDIKLIKKAVFSRPMPDQQALATGLMILADIDLREAVSQLSMPVCRMYGRLDGLVPIKVAHYMDELMPNSAKI-VFEQASHAPFISHNDEFISELRTFL 253          
The following BLAST results are available for this feature:
BLAST of DY258541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSBQ_BACSU2.238e-4134.60Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
BIOH_VIBFM9.170e-1122.99Carboxylesterase bioH OS=Vibrio fischeri (strain M... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BC03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258541 ID=DY258541; Name=DY258541; organism=Citrus clementina; type=EST; length=1260bp
CTTTTCTTGCTTCTATCTTTTGGTTTTCCCGGAAGTAAAGATGGTGATAC
GAGAACAAGGTCTATCGGCTGCCATGAACGCAAAAATCATAGGCTCAGGC
AAGGAAACTCTGGTTCTTGCACACGGGTTTGGAGGAGACCAGTCTATTTG
GGACAAAATCACACCCGTTTTGTCTCAGCATTACAGGGTTTTAGCTTTTG
ACTGGCTTTTCTCTGGAGCGATACTAAATAAAGATCATCAAAGCCTTTAT
AATCCTGTCAAGTATTCTTCATACGAAGCTTTTGCCGATGATTTGATAAC
TCTTTTAGAAGAAAATGACTTGAAATCAACCCTGTTCATTGGCCACTCCA
TGTCTGGTATGATTGGTTGCATTGCTTCTGTTAAGAAACCTGAACTCTTT
AAAAGGCTCATACTCATTGGAACTTCTCCTAGGTACATCAACACAGATGA
TTATGAAGGTGGGTTCAAACCTTCGGATATTGAAAATCTCATCTCAAATG
TAGAAACCAATTATGCTAGCTGGGCTTCAAGCTTCCCACGTCTTGTTGTG
GATACTAAAGATGCTCCCTCGGTCGAGAAATTTGAAAACTGCTTGAAAAG
AATGAGACATGAATTTGCTCTTCCTTTGGCCAAAACTGTGTTTTATAGCG
ACGAAAGAGAGATTCTCGACAAGGTCGAGACACCATGCACTATTGTCCAA
CCCAGTAACGATGCTGTTGTGCCGAACTCAGTTGCTTACTACATGCAGGA
GAAGATGAAGGGAAAATCAACGGTGGAGATCATAGAGGCCGATGAACATT
TCCCACAGCTTACTGCTCATCTTCAGCTTATTGATGTGTTGAATAAAGTG
TTAGGCTTTTGATGTTTAATGAATTATAATTACTAAAAAATACAATTAAT
TGCAAGGCCACCAATCCGGGTTGGCTGGATGGCCTTTTGAATGTTTGTTT
GGTTGTTGTAATTATTTTGGTGGGATTAAATTAAGTAATCCGGGATTTGC
AACCAAAAAAAAAAAAAAAAAAAAACCCCAACTTTCTTTGAAAAAGTTTG
GGATTATAAAAAAACATTTCTTTTTCATTTTTTTGCAACAAAAAGGTCCC
CATACCAATCAAAAAAAAAAATCTTTTTTTCCCCCCCCCCCCTGAAAAAT
CCCCCAAAAAAGGGAGACCCCAAATTAAAAGGGGCCCTAAACGGTGTTTT
TTCCGGGGGCCCCCCCCTGGGGCCCCCCCGGGGCCCTCCCCCCACAAATA
TCTCCTTGGT
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