DY258546

Overview
NameDY258546
Unique NameDY258546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1277
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258546 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.199e-11
Identity = 52/241 (21.58%), Postives = 88/241 (36.51%), Query Frame = 1 
Query:    1 IILKNFKYGLDGIDVWIEIMIWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGDKWNGSWWFEMNFCEKIIEVVNIXIWSWLVIDXXXXXXXXXXXXXIKNCIKVC*KLIWDEGXXXXXXXXXDXDK*YVKMVIERFGIKISIVLVEVL*WDILDEVYLGKR**LEWRDD*EVXXXXXXXXXXXXXXXXXXXXRNRNDRVKKRWRCSKIE*KVMXVDR*KVKNDGGLIGKGILNSIWI 723
            ++++++ + +DG+++W  I  WV                              G GDK + SWW  M   + +IE   I IW    +              + N   V  + + + G         D D  ++K +  +    + I ++E+L     DE+YLG+R    W  D E                     RN + R K R     I   ++  +      +GG+ GKGI NS+ I
Sbjct:  646 LLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886
The following BLAST results are available for this feature:
BLAST of DY258546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LOX5_ARATH4.199e-1121.58Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258546 ID=DY258546; Name=DY258546; organism=Citrus clementina; type=EST; length=1277bp
ATTATATTAAAAAATTTTAAATATGGTTTAGATGGAATTGATGTATGGAT
TGAAATTATGATATGGGTAAAAGATTATTGATATATATTTTATAAAGATG
ATGATTATGTAAAGTATGAGGAGGAAATTAAAGTATGGTGGAAAGAAATT
TGAGAAGTAGGTGATGGTGATAAGTGGAATGGGAGTTGGTGGTTTGAAAT
GAATTTTTGTGAGAAGATAATAGAAGTTGTAAATATTNTGATATGGAGTT
GGTTAGTTATTGATGGTTAAGTGAAGTTTGGGAAGTATGGATATGTTGGA
TAGATTAAAAATTGTATTAAAGTATGTTGAAAATTAATTTGGGATGAAGG
AATANATGAATTAGNAGAGTTATTAATTGATTNAGATAAGTAGTATGTTA
AAATGGTAATTGAAAGATTTGGGATAAAAATTAGTATTGTATTGGTAGAA
GTTTTATAGTGGGATATATTAGATGAAGTTTATTTGGGGAAGAGGTAATG
ATTAGAATGGAGAGATGATTAGGAGGTTTTGATAAAATTTGAAGAGTTGG
GTGAGAAGTTGAAAGAAATAGAGTAAAAAATAGTGGAGAGGAATAGAAAT
GATAGGGTTAAAAAAAGATGGAGATGTAGTAAGATAGAGTAAAAAGTTAT
GNATGTAGATAGATGAAAAGTAAAAAATGATGGAGGGTTGATAGGAAAAG
GGATATTAAATAGTATATGGATTTAAAGAAAGTTTAAGTAGTTTTAATAA
AAATAATTAAGTGTTTTTGGGGGTAAAAAAAAAAAAAAAAAAAAAAAATT
ATATTTTTTTGTAAAAAGTTGGTTTTATAAAAAAATATTGGTTATAAATT
TGGTGGAATGAAAAGGGTAATAAATAATAAAAAAAAAATAATAATTTGAA
AATAGGTTGAAATGGATAAAAAGAAAGGGATAAAAAGGGGAATAATTTTT
TTTGGGATGTTTTGTGGGGGTGATAAAAAATTTTGGAAGGTTAAATTGGG
ATAATAAAAAAAATTTTTTAATGTTGTTGAAAAAATTGTGTTTTATAGAT
GATATAGAAAATTAAAAATATAATTTATTGTTGAGGATTTTATATTAGAA
ATTTTTTTTTTTGGAAAAAATGGGAGATTTTTTGAGTGGTAGAATGAAAA
AAAAATGGATAAGTGGGGGGGATAATAAGAGGGAGGAGGGGGGAAGGGGG
GGGGGATTTTTTGGGGATGGGGTGTGAGTGGAGATAAATATTGGGATGAA
TATAAAATTATAATAAAATAATAAAAA
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