DY258552

Overview
NameDY258552
Unique NameDY258552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1054
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1165 contig Ccv1_Contig1165:1..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.333e-24
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y+VDAADR+ V  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.5969 bits (244), Expect = 6.504e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.352e-24
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.5969 bits (244), Expect = 6.504e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.352e-24
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.5969 bits (244), Expect = 6.504e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.352e-24
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.5969 bits (244), Expect = 6.504e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RFR+MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.352e-24
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 97.0561 bits (240), Expect = 1.892e-19
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ RF++MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.266e-23
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 718
            Y+VDAAD D +  +R+ELH LL KP L+GIP+LVLGNK D   AL +  L++++ L SI DRE+CCY ISCK+  NID  + WLI+HSK+
Sbjct:   94 YMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183

HSP 2 Score: 95.5153 bits (236), Expect = 5.506e-19
Identity = 40/51 (78.43%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G ++EDMIPTVGFNMRK+T+GNVTIK+WD+GGQ RFR+MWERYCRGV+AI+
Sbjct:   43 GQFAEDMIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.160e-23
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y++DAADR+ +  +R+ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI++SK+ +
Sbjct:   94 YMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKSRR 185

HSP 2 Score: 97.4413 bits (241), Expect = 1.449e-19
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQ R+R+MWERYCRGV+AI+
Sbjct:   43 GQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.160e-23
Identity = 48/92 (52.17%), Postives = 70/92 (76.09%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D + AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.9821 bits (245), Expect = 4.980e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+
Sbjct:   43 GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.685e-23
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.9821 bits (245), Expect = 4.980e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+
Sbjct:   43 GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93
[Close]
BLAST of DY258552 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.685e-23
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2 
Query:  449 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 724
            Y+VDAAD++ +  +++ELH LL KP L GIP+LVLGNK D   AL ++ L++++ L +I DRE+CCY ISCK+  NID  + WLI+HSK+ +
Sbjct:   94 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185

HSP 2 Score: 98.9821 bits (245), Expect = 4.980e-20
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 153
            G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RFR+MWERYCRGVSAI+
Sbjct:   43 GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93
The following BLAST results are available for this feature:
BLAST of DY258552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AR8BA_DANRE3.333e-2455.43ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_RAT4.352e-2453.26ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE4.352e-2453.26ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN4.352e-2453.26ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
ARL8B_BOVIN4.352e-2453.26ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
ARL8_DROME1.266e-2356.67ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
ARL8B_MACFA2.160e-2352.17ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8A_MOUSE2.160e-2352.17ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
ARL8A_HUMAN3.685e-2352.17ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK3.685e-2352.17ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BD07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258552 ID=DY258552; Name=DY258552; organism=Citrus clementina; type=EST; length=1054bp
GGAGGATATAGTGAAGACATGATTCCAACTGTCGGTTTTAATATGCGGAA
AGTTACAAAGGGAAATGTTACAATAAAGCTCTGGGACCTTGGAGGTCAAC
GGAGGTTTCGTACTATGTGGGAGCGTTATTGTCGTGGGGTTTCTGCAATC
TTGTAATACCTCTCAGTCTCTTCATTCTCTCTTACATATCATATAACTCA
TTGCCTTTTTTGTGAGCTGGTTTCAGTGTTTGCATGCCTGTACATTATCT
TGATCCTAGGATAAAAGAAAATTGGAATCTTACCTAAAGCATTTTAAGTC
TACAGTTTTAGGAATAAAGGGCTTGTTAATTCCCTTTATTCAGCTAAGAA
GTGGGAGCTGTTGTGAATTATGTTTGATATATTTATTAGTCAGGTGTTTC
AAATAGATTCACCATATTGTGCCTCCTTTTGATGGATGCAAAGACAGATA
TGTAGTCGATGCCGCTGATAGAGACAGTGTTCCTATAGCTCGGAGTGAAT
TGCATGAGCTTCTGATGAAACCTTCCTTGAGTGGAATCCCTTTGCTTGTT
CTTGGCAACAAAATCGACAAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGT
GGATCAACTAGGCCTTGAATCAATTACTGATAGAGAGGTGTGCTGCTACA
TGATATCATGCAAGGACTCTATAAACATAGATGCTGTCATTGATTGGCTT
ATCAAGCACTCTAAAACTGCCAAATAAGCAAGCTTCAATGCTATTCGACT
TTTATTTTCCTGAAGAATGATCGAGGCAAANGACCGAAACAGTAAAGTAG
AACAGGTGAAAGAAAACTTCCCCAGTGGGGGTTGTCCACCCTATATGGTT
TTAATATGCTCCAAATGGTTTGTGCAAAAATGGAACAATCTAGGAAAATC
TTTCTTGCCTTTGGTTCTTTTATTCTTTTCCCTTCGCCATTTATGTGGGT
TCCCAATCCATTAATATACTTTGTTGGAAATTACACATAAATTATGTACC
CTGCAACCCGCTTATTTTAAAAAAAATGGAAAGGAAAATGCCCAAAATTT
AGGT
back to top