DY258554

Overview
NameDY258554
Unique NameDY258554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258554_ssr305 microsatellite DY258554_ssr305:305..316. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:505..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.657e-30
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GNG VL NFDV TPDAFD++Y++NLR  KGL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  242 GNGTVLVNFDVVTPDAFDSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.010e-29
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GG+G  + N D  TPD FDN YFSNL+  +GLLQSDQELFST GA T AIV +F  NQTAFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  235 GGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.837e-29
Identity = 66/111 (59.46%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDLVSS 338
            GNG VL NFDV TP+ FD +Y++NLR  KGL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  242 GNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.458e-28
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GNG VL NFDV TP+ FDN++++NLR  KGL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  213 GNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.540e-28
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 287
            G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T AIV  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  242 GSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.125e-27
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 287
            G+ + + N D+ TPDAFDN YF+NL+   GLLQSDQELFST G+ T A+V  F  NQT FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  212 GSASTITNLDLSTPDAFDNNYFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 59/92 (64.13%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GNG VL NFD  TP  FD +Y++NL   KGL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  242 GNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.040e-26
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDL 329
            G+   + N D+ TPDAFDN YF+NL+   GLLQSDQELFS  G+ T  IV  F  NQT FF+ FV SMI+MGN+ PLTG+ GEIR +C+ VNG +     S++  GD+
Sbjct:  243 GSNTGITNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQS-----SATEAGDI 345          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.509e-25
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 290
            GN +VL +FD++TP  FDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  F      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  241 GNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 336          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.574e-25
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 290
            GN +VL +FD++TP  FDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ PLTG QGEIRLNCR VN N+
Sbjct:  222 GNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 317          
The following BLAST results are available for this feature:
BLAST of DY258554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
PER22_ARATH2.657e-3066.30Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER15_IPOBA1.010e-2966.67Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER3_ARMRU3.837e-2959.46Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PERE5_ARMRU1.458e-2865.22Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER53_ARATH5.540e-2860.64Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU6.125e-2758.51Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER23_ARATH1.045e-2664.13Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER54_ARATH3.040e-2653.70Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER1B_ARMRU1.509e-2559.38Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1C_ARMRU2.574e-2558.33Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BD09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258554 ID=DY258554; Name=DY258554; organism=Citrus clementina; type=EST; length=473bp
AGGGTGGAAACGGCGCCGTTCTTGCTAATTTTGATGTCAAAACACCTGAT
GCTTTCGACAACAAATACTTCTCCAATCTTAGACTCCGCAAAGGCCTTCT
GCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTGCCGATACCGCTGCCA
TTGTCGAGGACTTTGGGAGGAACCAGACTGCTTTCTTTAAAAACTTTGTG
ATCTCAATGATAAGAATGGGCAATTTGAAACCACTGACAGGAAATCAAGG
GGAGATTAGATTGAACTGCAGGAGGGTCAATGGAAACAATAATATTGCAA
CAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTAATAAGCT
AGCTTGCGGCATATGCGAGAGAGTTTTTGTGCTTAACAAACTCGAATTTA
ATCTTATCGTTTGGCCTGAAACATGTTATGTGTTTTCAAATAAATTAACT
ATCAAACTTGAGTTTAAAAAAAA
back to top