DY258561

Overview
NameDY258561
Unique NameDY258561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length254
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig308 contig Ccv1_Contig308:626..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258561 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.676e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 2
Query:   11 GKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 133
            GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLSK+G
Sbjct:  191 GKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKIG 231          
BLAST of DY258561 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 2
Query:    2 NLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 133
            +LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct:  187 DLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230          
BLAST of DY258561 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 133
            LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL+K+G
Sbjct:  175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217          
BLAST of DY258561 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.640e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2
Query:    5 LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 133
            LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL+K+G
Sbjct:  171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213          
The following BLAST results are available for this feature:
BLAST of DY258561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSBQ_ONOVI6.676e-1278.05Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH2.537e-1170.45Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_MAIZE4.327e-1174.42Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE9.640e-1172.09Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BE09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258561 ID=DY258561; Name=DY258561; organism=Citrus clementina; type=EST; length=254bp
GAACCTCACTGGAAAGCTCTTCCAGACCATCGGCAATCTTGACCATGCGG
CAAAGATTAAGAGCACTCCTGAAGCAGAGAAATACTATGCTGAGACTGTA
TCTACCCTGAACGATGTTCTCTCCAAGGTTGGCTAAGCAGAATTAATATA
ATCTGATGTAAACTATATTTTTCATTTTGTGAGGCAACAACTTCTGTGAA
TTTTATTGCAAGCTGGCGTTCCGCTCAAAGTATCGAGAATAATTTGTCCA
GGGT
back to top