DY258568

Overview
NameDY258568
Unique NameDY258568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10540 contig Ccv1_Contig10540:617..1733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258568 vs. ExPASy Swiss-Prot
Match: AXR4_ARATH (Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.113e-68
Identity = 129/248 (52.02%), Postives = 175/248 (70.56%), Query Frame = 2
Query:    2 FDQIVETGQIPYEEILKARVLERKSVKVIELGSDEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLDTGIKXXXXXXXXXXXXIRDFVLGSSFGYQWLIRFCCMKKVGSFDVEDNRVLLKGRDRCRAVSEMGRKLNNSFDMAEWGSSEGIKGIPMQILXXXXXXXXXXXXXXRVADALPQAKFVGHSGGRWPQVDSADELAKHIADFVSSLPKTVRQVEEEPIPEHIQKMFDE 745
            FDQ++ETG +PYEEI+K +  +R+S K IELGS+E  RVLGQVIDT  LAPVHLVLHDSAL +++NWV+EN  SV+S+TL+D+ I             IR+ +L  SFG++ L+ F C K++   D++ +R+LLKGR+   AV     KLN+SFD+A+WG+S+GI GIPMQ++              RVA ALP+AKFV HSG RWPQ   + ELA +I++FVS LPK++R+V EEPIPE +QK+ +E
Sbjct:  193 FDQMIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSISPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMTLSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWSDEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQKVLEE 440          
The following BLAST results are available for this feature:
BLAST of DY258568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AXR4_ARATH3.113e-6852.02Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BF12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258568 ID=DY258568; Name=DY258568; organism=Citrus clementina; type=EST; length=1117bp
GTTTGATCAGATTGTTGAGACTGGGCAAATTCCTTACGAGGAGATACTGA
AAGCTAGGGTTTTGGAGAGGAAGAGTGTTAAAGTTATTGAATTGGGAAGT
GATGAGGTTGGTAGGGTTTTAGGGCAAGTTATAGATACTTTTAATTTAGC
TCCTGTGCATTTAGTTTTACATGATTCAGCTTTGCCAATGAGTGCTAATT
GGGTTGCTGAAAATCCTGGTTCAGTAAAAAGTCTAACACTTCTAGATACT
GGAATTAAGCCTGCTTTGCCTCTTTTTGCATTGAATTTACCGTTGATTAG
GGATTTTGTTTTAGGATCTTCGTTTGGATATCAGTGGTTGATTAGGTTTT
GTTGTATGAAGAAGGTTGGCAGTTTTGATGTTGAGGATAATAGAGTGCTT
TTGAAGGGAAGAGATCGGTGTAGAGCTGTTTCAGAGATGGGGAGGAAGCT
GAATAACAGCTTTGATATGGCAGAATGGGGCAGTTCGGAGGGGATAAAAG
GAATACCGATGCAAATACTTTGGTCTAGTGTTTGGTCTAAGGAATGGAGT
GAGGAAGGAAGTCGAGTTGCGGATGCACTTCCGCAGGCAAAATTTGTGGG
ACATTCAGGAGGACGTTGGCCTCAGGTAGACTCTGCTGATGAACTAGCTA
AGCACATTGCTGATTTTGTTTCTTCTTTACCAAAAACTGTTAGACAAGTC
GAGGAGGAGCCCATACCCGAGCATATACAGAAGATGTTTGATGAAGCTAG
TAGCAGTGGCCATAATCACGACCATCATCATAGTCACAGTGGCCATGACC
ACCATGAAAGTCATGCTCATGCGGCAGGCTATTTGGGATGCTTACGGGCT
TGGCCATACAGGGGGTCAATGGTCTGGTTTCATCTCCTCCTTTACAATTT
AACTGTCAAATGGGAGCTTCAGGCTTTTCCCTACCTTAAATAAGGAAAAG
CTTTTTTCTATTCCCGGAAACGGGTTTTTAATCTTATCCTTTTTGGAGAT
TTTTTTTCCCCCCGGGAAGGGTTTTTTTGGTTTTTATTACATTTGAAAAT
GGAACAACCCCCCTTGTGCGGGGGGGAATTTTAATTTTAAAATTTTTTCT
TTAGACCTGGGTGGGGG
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