DY258578

Overview
NameDY258578
Unique NameDY258578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.047e-56
Identity = 123/207 (59.42%), Postives = 137/207 (66.18%), Query Frame = 3
Query:  291 MDRQGHGGQPTSMGLVGSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLKDEVLASIPRGNLPVWGTSDMP 911
            MD+Q HG          SGA + YGTNPYQ N M+         T+       +QPG                           +FW NQ++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFIL LTLRSWNHTEENKRRTLQKNDIAAA+T+TDIFDFLVDIVPREDL+DEVL SIPRG +P    +  P
Sbjct:    1 MDQQDHGQ---------SGA-MNYGTNPYQTNPMS--------TTAATVAGGAAQPG------QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYP 183          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.586e-51
Identity = 108/179 (60.34%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  339 GSGAQVPYGTNPYQQNQMAGGPNPG--PAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLKDEVLASI 869
            G  + + YG+NPYQ N M   P     PA   +   Q                                 SFW  Q++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFIL LTLRSWNHTEENKRRTLQKNDIAAA+T+TDIFDFLVDIVPREDL+DEVL  +
Sbjct:    5 GQSSAMNYGSNPYQTNAMTTTPTGSDHPAYHQIHQQQQQQ------------------------LTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGV 159          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 4.875e-46
Identity = 90/114 (78.95%), Postives = 103/114 (90.35%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLKDEVLASIPRGNLP 887
            FWANQ QEIE   DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFA+ACEMFIL LTLR+W HTEENKRRTLQKNDIAAAI++TD+FDFLVDI+PR++LK+E L  + +G +P
Sbjct:   58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGL-GVTKGTIP 170          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.195e-45
Identity = 90/119 (75.63%), Postives = 104/119 (87.39%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLKDEVLASIPRGNLPVWGTS 902
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FIL LT+RSW H EENKRRTLQKNDIAAAIT+TDIFDFLVDIVPR+++KDE  A++  G + V  T+
Sbjct:   47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTA 163          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.568e-44
Identity = 86/103 (83.50%), Postives = 96/103 (93.20%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLKDE 854
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FIL LT+RSW H EENKRRTLQKNDIAAAIT+TDIFDFLVDIVPRE++K+E
Sbjct:   60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEE 162          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.074e-33
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI  LTLR+W HTE+NKRRTLQ+NDIA AITK D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.074e-33
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI  LTLR+W HTE+NKRRTLQ+NDIA AITK D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.074e-33
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI  LTLR+W HTE+NKRRTLQ+NDIA AITK D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 8.074e-33
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI  LTLR+W HTE+NKRRTLQ+NDIA AITK D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of DY258578 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.074e-33
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILXLTLRSWNHTEENKRRTLQKNDIAAAITKTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI  LTLR+W HTE+NKRRTLQ+NDIA AITK D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of DY258578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC9_ARATH1.047e-5659.42Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH8.586e-5160.34Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC2_ARATH4.875e-4678.95Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC1_ARATH9.195e-4575.63Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH1.568e-4483.50Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC_RAT8.074e-3368.27Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB8.074e-3368.27Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE8.074e-3368.27Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN8.074e-3368.27Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN8.074e-3368.27Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BH06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258578 ID=DY258578; Name=DY258578; organism=Citrus clementina; type=EST; length=1205bp
AAAAGAAAGAGAAAAAAAAAAAATCCCTTGATTCTCTCAAAACCCTAAAA
GGGGAAGGTTATATTTTCCAAAATCGGATCTTTTTATTTCATTCTCTCAC
TGTACGGTATTAATAATAACCCAGAAAAAGAGAAAAAATAAAAAGCTTTT
TATTCATCAGTGCCTATTAGATCTCTTACCAAATAAAAGGAAAAAAAAAT
CCCTAAAAAGATTTTCTTTTTCTTTCTTTTCAGGGGTTTCAATCTGGGTG
AAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTAGTATGGATCGGC
AAGGACACGGTGGACAACCCACATCTATGGGGTTGGTTGGTAGTGGAGCT
CAAGTGCCATACGGCACAAACCCGTATCAGCAGAATCAAATGGCTGGCGG
TCCCAACCCTGGCCCAGCTGTCACATCAGTCGGGGCAATTCAATCTACTA
GTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTTGCCTATCAACAA
ATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACTCCAGTCTTTTTG
GGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATTTCAAGAATCATA
GCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCCGATGAGGATGTG
AGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAAT
GTTCATCTTGNAATTGACGCTGCGTTCCTGGAACCACACTGAAGAGAACA
AGAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCAATCACTAAGACT
GATATATTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACCTGAAAGA
TGAAGTACTTGCATCAATCCCAAGAGGAAACCTGCCTGTTTGGGGAACCT
CTGATATGCCCGCCCTATTGCTATATGCCAACCTCACATGCTTTCCAAGT
TGGATCCGCTGGGGCTGAATCTGGGTAAGCCTGGGTATGGAACCCTGCAA
ATTTACCCCCAACCAACCTCCTCCCCAATTTGGGGCCAACAAGATGGGGG
CCCCAGGAAACCAAAAAAACAACCATTCCCCCTTCAAAACCATTTAGGGG
GCTGGAACCATCCCAATTAACCCAAAAAAATAAAAAAAGGAGAGAAGGGG
GGGGCCCCCTAAAAAAACCCAAAAGCCCCCCTCGTTTTTGAAAGTTTTCA
GGCGA
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