DY258589

Overview
NameDY258589
Unique NameDY258589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1329
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258589 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.710e-15
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  286 NENEIAVLVPTDGGLNCNEEDDELKIAGLGSPGHALGDIFSVMFKAVKVSGSHLLPDRFKEKKEMCRS 489
            N  +IA  VP DG LN  EE+DE+ IAG G  GHA+GDI  V FK VKVSG  LL   FKEKKE  RS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLA-LFKEKKEKPRS 142

HSP 2 Score: 34.2686 bits (77), Expect = 1.710e-15
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  168 EKPLAGTSLAS*IVLDKIDSEAQQLVSDIHVCSIVQYI 281
            +KP AG+S A  IVL+KI  EA+Q  S I  C+ VQ I
Sbjct:   37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74
[Close]
BLAST of DY258589 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.710e-15
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  286 NENEIAVLVPTDGGLNCNEEDDELKIAGLGSPGHALGDIFSVMFKAVKVSGSHLLPDRFKEKKEMCRS 489
            N  +IA  VP DG LN  EE+DE+ IAG G  GHA+GDI  V FK VKVSG  LL   FKEKKE  RS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLA-LFKEKKEKPRS 142

HSP 2 Score: 34.2686 bits (77), Expect = 1.710e-15
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  168 EKPLAGTSLAS*IVLDKIDSEAQQLVSDIHVCSIVQYI 281
            +KP AG+S A  IVL+KI  EA+Q  S I  C+ VQ I
Sbjct:   37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74
[Close]
BLAST of DY258589 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.710e-15
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  286 NENEIAVLVPTDGGLNCNEEDDELKIAGLGSPGHALGDIFSVMFKAVKVSGSHLLPDRFKEKKEMCRS 489
            N  +IA  VP DG LN  EE+DE+ IAG G  GHA+GDI  V FK VKVSG  LL   FKEKKE  RS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLA-LFKEKKEKPRS 142

HSP 2 Score: 34.2686 bits (77), Expect = 1.710e-15
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  168 EKPLAGTSLAS*IVLDKIDSEAQQLVSDIHVCSIVQYI 281
            +KP AG+S A  IVL+KI  EA+Q  S I  C+ VQ I
Sbjct:   37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74
[Close]
BLAST of DY258589 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.810e-14
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  286 NENEIAVLVPTDGGLNCNEEDDELKIAGLGSPGHALGDIFSVMFKAVKVSGSHLLPDRFKEKKEMCRS 489
            N  +IA  VP DG LN  EE+DE+ IAG G  GHA+GDI  V FK VKVSG  LL   FKEKKE  RS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLA-LFKEKKEKPRS 142

HSP 2 Score: 30.8018 bits (68), Expect = 1.810e-14
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 3 
Query:  168 EKPLAGTSLAS*IVLDKIDSEAQQLVSDIHVCSIVQYI 281
            +KP A +S A  IVL+KI  EA+Q  S I  C+ VQ I
Sbjct:   37 KKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLI 74
The following BLAST results are available for this feature:
BLAST of DY258589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS23_FRAAN1.710e-1560.2940S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.710e-1560.2940S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.710e-1560.2940S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.810e-1460.2940S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CB01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258589 ID=DY258589; Name=DY258589; organism=Citrus clementina; type=EST; length=1329bp
CTCAGTAAATGACTTTTTCCTCATGAACATTGGAGTTGTTTTCATTTTCT
CTTCACAAAATGTAGGCCAGCAAGTGGGTTGCTAATTTGTGTTGGGCGAT
AAGAGTCAGTGCAGCATTTGGAAGTGGGCCAAAAAGAAAGACATTTTGTC
TCGTTCATGGATGAGTGGAAAAGCCATTAGCTGGTACTTCCCTCGCGAGT
TGAATTGTTCTTGACAAAATAGATAGTGAAGCTCAACAGCTGGTCTCGGA
TATACATGTCTGTTCTATAGTGCAATATATCATGAAACGAGAATGAGATT
GCTGTTCTTGTTCCGACTGATGGTGGATTAAACTGCAATGAAGAAGATGA
TGAGCTGAAGATAGCTGGATTGGGAAGTCCGGGACATGCGCTGGGTGATA
TTTTCAGTGTCATGTTCAAAGCTGTGAAAGTCTCTGGCAGTCATCTTCTC
CCGGATCGCTTCAAAGAGAAAAAGGAGATGTGCCGGTCTTAGAAGAACAT
GCTTGTCTTAGACGGCAAACTCTTTAATATCTGGTTTAAAGAAATCAGAT
TGTTGCATTTTGTTATCATGTGAAGGATATGAAGAAACTATTATCATCTG
TCTAGCCAGTGCATCGCAGTGGAGCTGTAGTGAGTCTTCACAAAGAAAAC
AAATGAACTGCCTACCCTGCTGTCAACCCTTTCCTCGTCAAAGGCTGGAG
CTTCATGAATAAAATCGGGATCCATTCATTGCTGCTATACGACGGTAATT
TGGTTAAGCGAATCTGATTTGCCCGTCCACCCTGGCATCCCCTCACAGTT
GACGGATATATGCCCCGGAACCCAGGTTCTCGTCCATTTCGTCCAGTAGT
CGCTTGGTCCCCAGGATTTTCTTGGCTATAACACGCTTAACCACATTGGT
TGGTTACCAATTCTAAAAACCACGAGCAAAAAATCGGAAAATCTAAATGG
GTACCGAATATTAAGCAATACCCAAAATAAACCTTCACGTCTCTTCTTTT
CCTTTGGGGGAAAAATTTTTCCTCGTTCATCCTCAATTGGCTTCCAAACC
GGGAACTTCTAAAAGCTATATTTATTTTTGCCCCTCTCGATGCGCTTTTT
TTCATCTCTCCTTTCTCTCGTCTCCGCGCGACCAGCTAAAAGGGAATACC
CACATTCTTTTTATTTAAAAAAAAGAAAACAAAAACAAAACACACAACAA
AAAAAAACTCCCCACGCGTTTTCCTTTATTATATTATAAAAGCATGTGTA
TTTTCTCTTATTTAACATAAAAAATCTATTTGTCATTTTCACCTTCAATT
AAAACACCTCTTCTCTGTGTCTCGCCCCA
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