DY258590

Overview
NameDY258590
Unique NameDY258590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1184
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1176 contig Ccv1_Contig1176:1..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258590 vs. ExPASy Swiss-Prot
Match: PLD3_XENTR (Phospholipase D3 OS=Xenopus tropicalis GN=pld3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.669e-15
Identity = 73/303 (24.09%), Postives = 125/303 (41.25%), Query Frame = 2
Query:    8 PDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIA---KKVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQLFYFATSLQLPLICSPRGTRATLR-------------------ISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPSFSRVHHGKYAVSDSPPHIG 850
            PD    A ++++ + +  +V ++       G++H K W+ D    YIGSAN DW+SLT                      QVKE+G  +  C  +A   KK+             LP      Y    N D+  Q+   +T+ Q+ +  SP    AT R                   IS MD+    ++     YW  + + + + V+ ++ NV++L++ W +   +   +L+SL  + +  N S YN     +E+K + VP   +                 ++RV+H KY V+D   +IG
Sbjct:  170 PDSPLRAKDISALKDSGADVRVVDLPKLTDGVLHTKFWVVDSEHFYIGSANMDWRSLT----------------------QVKELGATIYNCSCLAEDLKKIFEAYWILGLPNATLPSPWPVNYSTPYNKDTPMQVMLNSTASQVYISSSPPPLSATGRTDDLQSIINIIDDAKKFVYISVMDYSPTEEFSHPRRYWPYIDNHLRKAVYERNVNVRLLISCWQNSRPSMFTFLRSL--AALHSNKSHYN-----IEVKIFVVPATEVQKKI------------PYARVNHNKYMVTDRVAYIG 431          
BLAST of DY258590 vs. ExPASy Swiss-Prot
Match: PLD3_XENLA (Phospholipase D3 OS=Xenopus laevis GN=pld3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.669e-15
Identity = 71/273 (26.01%), Postives = 113/273 (41.39%), Query Frame = 2
Query:   98 GIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIA---KKVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQLFYFATSLQLPLICSPRGTRATLR-------------------ISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPSFSRVHHGKYAVSDSPPHIG 850
            GI+H K W+ D    YIGSAN DW+SLT                      QVKE+G  +  C  +A   KK+             LP      Y    N D+  Q+   +T+ Q+ L  SP    AT R                   IS MD+    ++     YW  + + + + V+ ++ NV++L++ W +   +   +L+SL  + +  N+S YN     +E+K + VP            +        ++RV+H KY V+D   +IG
Sbjct:  199 GILHTKFWVVDNEHFYIGSANMDWRSLT----------------------QVKELGATIYNCSCLAQDLKKIFEAYWILGLPNATLPSPWPANYSTPYNKDTPMQVMLNSTASQVYLSSSPPPLSATGRTDDLQSIMNIIDDAKKFVYISVMDYSPTEEFSHPRRYWPEIDNHLRKAVYERNVNVRLLISCWKNSRPSMFTFLRSL--AALHSNTSHYN-----IEVKIFVVP------------ATEAQKKIPYARVNHNKYMVTDRVAYIG 430          
BLAST of DY258590 vs. ExPASy Swiss-Prot
Match: PLD3_MACFA (Phospholipase D3 OS=Macaca fascicularis GN=PLD3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.802e-11
Identity = 59/273 (21.61%), Postives = 108/273 (39.56%), Query Frame = 2
Query:   98 GIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIAK---KVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQL-------FYFATSLQLPLICSPR------------GTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPSFSRVHHGKYAVSDSPPHIG 850
            G++H K W+ D    Y+GSAN DW+SLT                      QVKE+G+ +  C  +A+   K+             +P T    Y  R N ++  ++         +  S   PL  S R              R+ + I+ M++L   ++     +W A+   +    + +   V++LV+ W H  ++   +L SL        + + N     +++K + VP            ++       ++RV+H KY V++   +IG
Sbjct:  198 GVLHTKFWVVDQTHFYLGSANMDWRSLT----------------------QVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDNARSFIYIAVMNYLPTLEFSHPHRFWPAIDDGLRRAAYERGVKVRLLVSCWRHSESSMRAFLLSLA-------ALRDNHTHSDIQVKLFVVP------------ADEAQARIPYARVNHNKYMVTERATYIG 429          
BLAST of DY258590 vs. ExPASy Swiss-Prot
Match: PLD4_HUMAN (Phospholipase D4 OS=Homo sapiens GN=PLD4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.966e-11
Identity = 73/278 (26.26%), Postives = 113/278 (40.65%), Query Frame = 2
Query:   98 GIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIAKKVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQ------LF-------YFATSLQLPLICSPRGTR---ATLRI----------STMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSL-LYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPSFSRVHHGKYAVSDSPPHIG 850
            G++H+K W+ D R +Y+GSAN DW+SLT                      QVKE+G  +  C  +A+ +             +P  V P   P++    + +      LF       YF+ S   P +C    TR   A L +          S M++   +++     YW  L +A+    F K   V++LV    +       YL+SL   SN   N S        V++K + VP        + N SN       FSRV+H K+ V++   +IG
Sbjct:  211 GVLHSKFWVVDGRHIYMGSANMDWRSLT----------------------QVKELGAVIYNCSHLAQDLEKTFQTYWVL--GVPKAVLPKTWPQNFSSHFNRFQPFHGLFDGVPTTAYFSAS--PPALCPQGRTRDLEALLAVMGSAQEFIYASVMEYFPTTRFSHPPRYWPVLDNALRAAAFGKGVRVRLLVGCGLNTDPTMFPYLRSLQALSNPAANVS--------VDVKVFIVP--------VGNHSNI-----PFSRVNHSKFMVTEKAAYIG 441          
The following BLAST results are available for this feature:
BLAST of DY258590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PLD3_XENTR9.669e-1524.09Phospholipase D3 OS=Xenopus tropicalis GN=pld3 PE=... [more]
PLD3_XENLA9.669e-1526.01Phospholipase D3 OS=Xenopus laevis GN=pld3 PE=2 SV... [more]
PLD3_MACFA3.802e-1121.61Phospholipase D3 OS=Macaca fascicularis GN=PLD3 PE... [more]
PLD4_HUMAN4.966e-1126.26Phospholipase D4 OS=Homo sapiens GN=PLD4 PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CB02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258590 ID=DY258590; Name=DY258590; organism=Citrus clementina; type=EST; length=1184bp
GGTATATCCCGACTTCACTACTGAAGCATCTAATCTTGCTTCAGGTAGAA
AAAATGTGGAAAATGTGACTCTATTACTTGGTGATTGGTGGGGTTCAGGC
ATTGTCCATGCCAAAGTTTGGATATCAGATTGCCGTGATGTGTATATTGG
ATCTGCTAATAATGACTGGAAATCTCTAACTCAGGAGTCTGCTTCTGTGG
GGTTACAGTGTCATCGATAGTCCTGAATCTTGATCATCGCATGGTTGCAG
GTGAAGGAAGTTGGAATTTATCTTGTTGGTTGTCCAACAATAGCAAAAAA
GGTCACCTCTCCCTCCAGTTCTTGAGGTTCCTCATGTGGAAGGCTACCCT
ATACTGTCAGACCCTTATATGTTCCGAGAGACAATGGAGACTCCTGGAAG
CAATTATTCTACTTTGCAACCTCATTACAGCTACCTCTCATTTGCTCCCC
CAGAGGAACCAGAGCTACACTTAGGATTAGTACAATGGATTGGCTTGGTC
AATCCCAATATTTGAAGCAAACTGTTTATTGGTCAGCACTTTCCTCTGCA
GTTTCAGAGGTTGTCTTCTCCAAGCATGCGAATGTGAAGATACTAGTAGC
ATATTGGGCACATTTTATCAACAACACAGATGAGTATCTCAAGTCTCTTC
TATACTCCAATGTCCTTTGCAATTCTTCGAAGTACAACAAATGTTCTGGC
AAAGTTGAGATCAAATACTATAAGGTGCCAGGATACAACTTGACAGGACC
TGCCATTCAAAATGGAAGCAATACTGGAAATATTTATCCCAGCTTTTCCA
GAGTTCATCATGGAAAATATGCAGTGAGTGATTCCCCACCTCATATCGGA
AACAACAACCTTGTGGTGGAATAACTTCTATACAACAACCTGGTGTCACC
TTTGGAACATACAATCCTGGAATTGTTTCCAAGCCTCCAGAAAATCTTTA
ATGCTGACTGGAAACTCACCAAATCCCTTTTCTGTGCAAAAAAATTGGGT
TGACCGCCCAGCCTCCTGCCTCTACGAATTTAAAGCGCTGCGATTTTTTT
CTCAATTTAAAAGTCAATTCCACACCTGTATCTTTGCCCCTAAAACCTTT
AAAAGGGAAGAAAATTATATCCAAATTTTTTATTTTTTCTTTTTTTTGGT
TTAAAACCAATAATTTTTGTTTTTTTCTTTTTTA
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