DY258593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258593 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.282e-25 Identity = 87/282 (30.85%), Postives = 113/282 (40.07%), Query Frame = 3 Query: 78 MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQ--------NSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDG--------------HDKESGNLDEVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQKSHDTXXXXXXXXXXXXXLESLTVEEINETTREWPCPACQGG 857 MS + G P SN+S K K S V+ ++ V DI L+S Q++G WEVY RK KNK GS K + Q N N KAWGH D +K G R N SGR W+T + K+ ARP L + + + P L++GW+W SR S H +D HD E LD + S++T L+SLTV EINE R+W CPAC+GG Sbjct: 1 MSFSKWGGKP-----SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAPQNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPHLYD-----GGFPSSAPVPPALKNGWDWSSRVASA---HPKDNSQVAAAADDDKASEHDAEDNELD--------------------FLDESDDDLHSDDFDSDVGEMSYETRKKNPWFNQLFHSLDSLTVTEINEPERQWHCPACKGG 239 HSP 2 Score: 24.6386 bits (52), Expect = 6.282e-25 Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 850 KGGPGALDWY 879 KGGPGA++W+ Sbjct: 237 KGGPGAIEWF 246
BLAST of DY258593 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.695e-20 Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = 3 Query: 138 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN-YKAWGHLDSTQKPGM--RGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQKSHDTXXXXXXXXXXXXXLESLTVEEINETTREWPCPACQGG 857 K KNV +V+ L +A L S+QDDGG WEV +K+KNK G+ + K++ SQNSN +AWG + + RGN SGR N + + ++ R + + + N +A RPPLE GWNWQ+R GS ++ D E D+V QKSH + L+SL++E+INE R+W CPACQ G Sbjct: 10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSNPPRAWGGQQQGRGSNVSGRGNNVSGRG--------NGNGRGIQANISGRGRALSRKYDNNFVAPPPVSRPPLEGGWNWQARGGSAQHTAVQEFPDVE----DDV-------DNASEEENDSDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNG 234 The following BLAST results are available for this feature:
BLAST of DY258593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258593 ID=DY258593; Name=DY258593; organism=Citrus clementina; type=EST; length=1275bpback to top |