DY258593

Overview
NameDY258593
Unique NameDY258593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1275
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258593 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.282e-25
Identity = 87/282 (30.85%), Postives = 113/282 (40.07%), Query Frame = 3
Query:   78 MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQ--------NSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDG--------------HDKESGNLDEVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQKSHDTXXXXXXXXXXXXXLESLTVEEINETTREWPCPACQGG 857
            MS  + G  P     SN+S K K     S   V+ ++  V DI L+S Q++G WEVY RK KNK GS   K +  Q        N N KAWGH D  +K G R N  SGR     W+T +   K+      ARP L +         +   + P L++GW+W SR  S    H +D               HD E   LD                                       + S++T             L+SLTV EINE  R+W CPAC+GG
Sbjct:    1 MSFSKWGGKP-----SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAPQNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPHLYD-----GGFPSSAPVPPALKNGWDWSSRVASA---HPKDNSQVAAAADDDKASEHDAEDNELD--------------------FLDESDDDLHSDDFDSDVGEMSYETRKKNPWFNQLFHSLDSLTVTEINEPERQWHCPACKGG 239          

HSP 2 Score: 24.6386 bits (52), Expect = 6.282e-25
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  850 KGGPGALDWY 879
            KGGPGA++W+
Sbjct:  237 KGGPGAIEWF 246          
BLAST of DY258593 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.695e-20
Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = 3
Query:  138 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN-YKAWGHLDSTQKPGM--RGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQKSHDTXXXXXXXXXXXXXLESLTVEEINETTREWPCPACQGG 857
            K KNV      +V+ L   +A   L S+QDDGG WEV  +K+KNK G+ + K++ SQNSN  +AWG     +   +  RGN  SGR         N + +     ++ R +  +   + N +A     RPPLE GWNWQ+R GS      ++  D E    D+V                                     QKSH +             L+SL++E+INE  R+W CPACQ G
Sbjct:   10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSNPPRAWGGQQQGRGSNVSGRGNNVSGRG--------NGNGRGIQANISGRGRALSRKYDNNFVAPPPVSRPPLEGGWNWQARGGSAQHTAVQEFPDVE----DDV-------DNASEEENDSDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPACQNG 234          
The following BLAST results are available for this feature:
BLAST of DY258593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SGS3_SOLLC6.282e-2530.85Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH1.695e-2031.56Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CB06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258593 ID=DY258593; Name=DY258593; organism=Citrus clementina; type=EST; length=1275bp
CACACTGTTTCCTTTTGCTCTCTCCACTCAGGTGAAGAGATCTTAGCTCG
GTAATCGAAGAGGATTTTTGCACTAAGATGAGTGCAAGAAGAGGTGGAAA
GTCTCCAATTGCTGCTGGCAGCAGCAACACTTCTGTGAAGGGGAAAAATG
TGACTGAAGTCTCCAATTCCCAGGTTGATCATTTGAGCGGATCTGTAGCA
GATATCAGCCTGGATTCGGCACAGGATGATGGTGGATGGGAGGTTTATGT
GAGGAAGTCAAAAAACAAAGCTGGCAGTGGGACTACCAAATCCTTTGGTT
CTCAGAATTCTAATTATAAGGCATGGGGACATCTGGATAGCACTCAGAAA
CCAGGAATGCGGGGTAATGGTAGCTCAGGGAGGGCTCCTGCCAAAACCTG
GACAACTGTAAATGCAGATTCTAAGATACCAGCTGGCAGAGTGAATGCAA
GACCCCAATTGACCAACTGGGTTCCTGAGACAAACAACATGGCCACACAA
ACAGGGATTCGCCCTCCTCTGGAGCATGGTTGGAATTGGCAATCTAGAGC
TGGTTCTACTATATTCAAACATTCAGAAGATGGCCATGATAAAGAGAGTG
GTAATCTTGACGAGGTCCACAAAGACAATGTTGAAGATGATTATGACGAT
GAGAAAGATGATGATTCTAATGTTTCAGATGATTCGGATGATGAGTTACT
GAGTGATGAGTTTGATTCTGATACCCGTCAAAAGAGTCATGACACACGTA
AGAAAAGCCGATGGTTCAAGAAATTCTTTTGAAGTTTGGAAAGCCTGACA
GTTGAAGAAATCAATGAAACAACAAGGGAGTGGCCCTGTCCTGCTTGCCA
AGGGGGGTCCTGGAGCCCTTGACTGGTACCGGCGGCCTAAGCCTTTTAAG
GACCCATGCCAAAACTAAAGGATCAAAGAGGGGGAAAACTCCCCTCGTAA
CTTTGCTGACCTTGTGGGATGAAAAAATACCAAGGGGCGGGGAATTTCGG
TTTTTCCCACGTTGTGGAAATTTTTTGGCAGGGGGAAAAGGGGTCGAAAG
AATAACAAAAAAAAATTTTTAAATTTTGTTTGGGCTCCCCAATGGTTTTA
TATTTACTTAAACCCAAGGGGCCTCTGGCAGAAAAGAAAAAAAAAAATAA
GGGGGAAAGTGGAAAAGGGAAAAACCCAAAAAAAAACTTTTTGTGGGACT
TTCTTTCTCCTTTCCTCCGAGTCGTTCTCTTGTTAGGGGAGGCCCCCCCC
ACCGCCCCCTCTTCCTATGTTTGGC
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