DY258595

Overview
NameDY258595
Unique NameDY258595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258595_ssr539 microsatellite DY258595_ssr539:539..554. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1178 contig Ccv1_Contig1178:1..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.033e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 1
Query:   64 NKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            N++SKEE+E+ +NKAKEIVS+ PVVVFSKTYCGYC RVK+LL QLG +FKV+ELD  SDG +IQ+AL+EWTGQ TVPNVFI G HIGGCD V+E ++ GKLVP
Sbjct:    8 NRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVP 110          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.245e-35
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 1
Query:   91 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +A+ K KE+VSSN VVVFSKTYC YCT VK+LL QLG  +KVVELD ESDGS+IQ ALAEWTGQRTVPNVFIGGKHIGGCD+   KH  G+LVP
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVP 94          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.103e-34
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   91 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +A+ KAKEIV+S  VVVFSKTYC YC RVKELL+QLG  FK VELD ESDGS+IQ+ LAEWTGQRTVPNVFIGG HIGGCD     H+ GKLVP
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVP 94          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.120e-34
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   91 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +A+ KA+E+VSSN VVVFSKT+C YCT VK+LL QLG  FKV+ELD ESDGS +Q ALAEWTGQRTVPNVFIGGKHIGGCD     HQ GKL+P
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIP 94          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.967e-33
Identity = 73/120 (60.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   49 MGLFQNKISK------EELE------IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            MG+ Q+  S       E+LE      +AL+KAKEIV+S+PVVVFSKTYC +C RVK LL +L  S+K VELD+ESDGS++Q+ALA+WTGQRTVP VFI GKHIGGCD  +  H+GG LVP
Sbjct:    1 MGMAQSSSSSSRPSDSEQLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 120          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.507e-32
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   91 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            ++L KAKEIVS NPV VFSKTYC +C  VK+LL +LG +FK VELD E DGS+IQAALAEWTGQRTVPNVFIG KHIGGCD     H+ GKL+P
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLP 94          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 2.843e-31
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   91 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            +AL KAKE V+S PVVV+SK+YC +C RVK+L +QLG +FK +ELD ESDGS++Q+ALAEWTGQRTVPNVFI GKHIGGCD  +  +  GKLVP
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVP 94          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.911e-19
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   97 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKLVP 372
            ++K K ++ ++ +++FSKT C YC  VK+L K+L     VVELD+ESDGS++Q+A  + +G RTVP VFI  K IGGCD   + H  GKL+P
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIP 92          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 9.486e-19
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  109 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            K  V+ NPVVV+SKT+C Y ++VK L K L     VVELD + S+GS++Q  L + TGQ TVPNVFIGGKHIGGC   ++ H  G+L
Sbjct:   79 KTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGEL 165          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.239e-18
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   73 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            S E  E    + ++++  N V++FSK+YC + TRVKEL   LG  + ++ELD   DG+ +Q  L E + Q+TVPN+F+   H+GGCD   + HQ G L
Sbjct:  102 SSEAREELRRRLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLL 199          
The following BLAST results are available for this feature:
BLAST of DY258595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GRXC1_ARATH2.033e-3771.84Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_RICCO3.245e-3575.53Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH2.103e-3474.47Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_VERFO6.120e-3473.40Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC4_ORYSJ3.967e-3360.83Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GLRX_SOLLC1.507e-3271.28Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC6_ORYSJ2.843e-3168.09Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_DICDI1.911e-1948.91Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH9.486e-1955.17Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
TRXR3_MOUSE1.239e-1841.84Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258595 ID=DY258595; Name=DY258595; organism=Citrus clementina; type=EST; length=1290bp
ACAATACCAAACAACAAAGGAAAGGATCGAAAACTAAAATCAAGTCAAAT
GGGTTTATTTCAAAACAAAATAAGCAAAGAAGAGCTTGAAATCGCGCTTA
ACAAGGCCAAGGAAATCGTCTCCTCCAATCCCGTCGTCGTCTTCAGCAAA
ACCTACTGTGGTTATTGTACAAGGGTGAAGGAGTTGCTTAAACAGCTTGG
AACGAGTTTCAAAGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAAA
TTCAAGCAGCTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTG
TTCATTGGGGGAAAACACATCGGTGGCTGCGACACTGTAATAGAGAAGCA
CCAAGGAGGAAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCC
TTGCTGACAAATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCG
TGTACATGGGCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTA
TATGGTGTGTAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTG
TGTGTTTTATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATA
TGCATGCGGTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAG
CGGCTTCAGAGGTTTGTATTGTTGGTGAGACACCAACTAGCGCCTCTGGT
TCATTCACATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTTCAACTAG
CATGCGGTAGAAAAGTTAGTTGCATATTTATATATCACGAAAAGAAAAGA
GCATGATCAGTTTCTTCTCTGTAATTTACTTCTATTACCTTTTAGGATAC
ATCTCTTTTTCATGTTTAAATGAGGGAGGATTATTTGTACCCCAGGGGAA
AGGGCGCTCTTCAATCCCATATTTTTCCTAAAAAAAAAAAAAAAAAAAAA
ACCCCATTTCCTTGCACAAAATTGGGCTTTAAAAAAAAACGTTTGGCTTA
TAAATTTGTTTGCACCGAAAAAGGTCCACTTCCCGTCAAAAAAAAAATCA
TTTATTTGGCCTTTCCCCCCTGAAAATCCCCCCAAAAGGGGAGTCTTTTT
AAAAGGGGCCCAATTCTTGTTTTCCTGGGCGACACCTGGGCCGCCGGGCC
CCCCAAATCCCTTCGGAAGGGTTACATTTTGCCCCCAAAGAATAAAAAAA
AAATTTCCCACTCCCGGGGTTTTAAAAAAAAAAACACCCCCTCACCGACA
AACACATCCAAAATTTAAAAAATATCCCTCCCCCCTCCTT
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