DY258598

Overview
NameDY258598
Unique NameDY258598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258598_ssr332 microsatellite DY258598_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.498e-38
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAEKV+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQLEYLEERRLKDLI KHSEFI YPISLW+EKT
Sbjct:  128 AYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGENLGRGTKMVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKT 213
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.957e-38
Identity = 94/194 (48.45%), Postives = 108/194 (55.67%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKGSQEGPLWKHQXXXXXXXXXXXXXXXLACPPQKSEKGRERNLCWEPFSMEGPPWSLRYSPFVPKKAPF 583
            AYLVA+KV+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQLEYLEERRLKDL+ KHSEFI YPISLWIEKT                                     I++ S E  L   Q                A   +      E +L  + FS+EG     +   FVPK+APF
Sbjct:  128 AYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGETLGRGTKMVLYLKEDQLEYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEG-QLEFKAILFVPKRAPF 320
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.957e-38
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAE+V+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDLI KHSEFI YPISLW EKT
Sbjct:  129 AYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKT 214
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.957e-38
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAE+V+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDLI KHSEFI YPISLW EKT
Sbjct:  129 AYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLWTEKT 214
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.556e-38
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAE+V+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDL+ KHSEFI YPISLW EKT
Sbjct:  129 AYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKT 214
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.556e-38
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAE+V+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTKITL+LK+DQLEYLEERRLKDL+ KHSEFI YPISLW EKT
Sbjct:  129 AYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLWTEKT 214
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 92/194 (47.42%), Postives = 108/194 (55.67%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKGSQEGPLWKHQXXXXXXXXXXXXXXXLACPPQKSEKGRERNLCWEPFSMEGPPWSLRYSPFVPKKAPF 583
            AYLVA+KV+VT KHNDDEQY+WESQAGGSFTVTRDTSGE LGRGTK+ L+LKEDQ+EY+EERRLKDL+ KHSEFI YPISLWIEKT                                     I++ S E  L   Q                A   +      E +L  + FS+EG     +   FVPK+APF
Sbjct:  128 AYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEALGRGTKMVLYLKEDQMEYIEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEG-QLEFKAILFVPKRAPF 320
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.657e-37
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAEKV+VT KHNDDEQY+WESQAGGSFTVTRD  GEPLGRGTKITL LK+DQLEYLEERRLKDL+ KHSEFI YPI LW EKT
Sbjct:  128 AYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDVDGEPLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKT 213
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.295e-37
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVAEKVIVT KHNDDEQYIWESQAGGSFTVTRD  GE LGRGTKITL LKEDQLEYLEERR+KDL+ KHSEFI YPI LW EKT
Sbjct:  133 AYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVDGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKT 218
[Close]
BLAST of DY258598 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.090e-36
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGEPLGRGTKITLHLKEDQLEYLEERRLKDLINKHSEFI*YPISLWIEKT 259
            AYLVA++V+VT KHNDDEQY+WESQAGGSFTVT DT+GE LGRGTKITL LK+DQLEYLEERRLKDL+ KHSEFI YPI LW EKT
Sbjct:  139 AYLVADRVMVTTKHNDDEQYVWESQAGGSFTVTHDTTGEQLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWTEKT 224
The following BLAST results are available for this feature:
BLAST of DY258598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
HSP80_SOLLC1.498e-3888.37Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP82_ARATH1.957e-3848.45Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ1.957e-3888.37Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.957e-3888.37Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ2.556e-3887.21Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ2.556e-3887.21Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP83_ARATH5.694e-3847.42Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP81_ARATH1.657e-3786.05Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP83_IPONI6.295e-3787.21Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_MAIZE9.090e-3682.56Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258598 ID=DY258598; Name=DY258598; organism=Citrus clementina; type=EST; length=783bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCTGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCCTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCAACTTGAGTACCTTGAGGAGCGCCGTTTGAAAGATT
TGATTAACAAACACTCTGAGTTCATTTAGTACCCAATTTCCCTCTGGATT
GAGAAAACCCCTGAGAAGGAAATTTCTGATGATGAGGACAAGGAAGAAAA
AAAGGAATGAGAGGGGAAAGCTGAGGATGTTGAAGAAGAAGAAAAAAAAG
AAAAACAAAAAAAAAAAAAAATCAGGAAGGGGTCCCAGGAGGGTCCTTTG
TGGAAACACCAAAAACCCCTTTGGAAGAAGAAACCCCAAGGAAATAAAAA
AAAAAAATTAGCCTGCCCCCCCCAAAAATCCGAAAAAGGACGGGAGAGAA
ACTTGTGCTGGGAACCCTTCTCCATGGAAGGGCCCCCTTGGAGTTTAAGG
TATTCCCCTTTTGTCCCCAAGAAGGCACCCTTTTTTATCCCTTTGAAAAA
AAGGAAAAAAAACCCAAAAAACTTCCACTCCCCCCCCCCCCCCCCGGGGC
CCTCCTCCAGGAAAAAAAAAGGGGGAAAAAAGATTAAAACCCCCCCAAAA
AACACTCGTGTTTTTTTGTTTTAGAAGGGGGGGTGGTTTGTGTGAATTTT
CCCCCCCAAAAGAAACATCCCCCCCCCCCCCCC
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