DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1180 contig Ccv1_Contig1180:1..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.332e-55
Identity = 103/151 (68.21%), Postives = 130/151 (86.09%), Query Frame = 2
Query:  521 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +++R E+YLFK+V+IGDSAVGKSNLL R+AR+EF PNSK+TIGVEFQTQ M I+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+R  TFE++GRWL+EL+THS+  V  +L+GNK  L+  R  +  +G++LA+++GLFF  T
Sbjct:    4 DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMET 154          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.512e-54
Identity = 105/152 (69.08%), Postives = 128/152 (84.21%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            S+++  E+YLFK+V+IGDSAVGKSNLL+R+AR+EF  NSK+TIGVEFQTQ M+I GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDI+RR TFES+GRWL+EL  HS+  V  +LVGNK  L+  R  +  +G+ALA+ +GLFF  T
Sbjct:    3 SDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVET 154          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.240e-48
Identity = 98/169 (57.99%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGTFPS*FPQMELVPFKRSFPKI 1033
            D   DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+ + + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQTF+++ RWL EL  H++ N+V ++ GNKS LK  R  +   G+ALA+ +GL F  T       +E V  +++F  I
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLET-----SALEAVNIEKAFQTI 169          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.114e-48
Identity = 96/156 (61.54%), Postives = 121/156 (77.56%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA Y  +D   DYLFK+VLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TFE+ GRWL EL  H++ N+V +L+GNKS L+     +T  G+A A+ + L+F  T
Sbjct:    1 MAGYKADDEY-DYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.761e-48
Identity = 97/153 (63.40%), Postives = 119/153 (77.78%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            Y + +   DY+FKVVLIGDSAVGKS +LARFAR+EF  +SKSTIGVEFQT+ + I+ K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTF+ I RWL EL  H++ N+V IL+GNK  L   R+  T   +  A+ +GLFF  T
Sbjct:    7 YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLET 159          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.152e-48
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            Y +  +  DY+FKVVLIGDSAVGKS +LARFAR+EF  +SK+TIGVEFQT+ + I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTF+ I RWL EL  H++ N+V +L+GNK+ L+  R   T   +  A+ +GLFF  T
Sbjct:    5 YGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 8.034e-48
Identity = 97/155 (62.58%), Postives = 119/155 (76.77%), Query Frame = 2
Query:  509 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            A Y  ED   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TFE++ RWL EL  H++ N+V +LVGNKS L+      T +G+A A+ + L+F  T
Sbjct:    3 AGYRAEDDY-DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMET 156          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.053e-47
Identity = 97/156 (62.18%), Postives = 119/156 (76.28%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA Y  ED   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++RR TFE++ RWL EL  H++ N+V +LVGNKS L+      T  G++ A+ + L F  T
Sbjct:    1 MAGYRVEDDY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 3.987e-47
Identity = 94/153 (61.44%), Postives = 118/153 (77.12%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            Y E  +  DY+FKVVLIGDSAVGKS LLARFAR+EF  +SK+TIGVEFQT+ + I+ + VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQ+F+ + RWL EL  H++ N+V +L+GNKS L   R   T   +  A+ + LFF  T
Sbjct:    8 YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMET 160          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.987e-47
Identity = 94/153 (61.44%), Postives = 118/153 (77.12%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            Y +  +  DY+FKVVLIGDSAVGK+ +LARFAR+EF  +SK+TIGVEFQT+ + I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVYDI++RQTF+ I RWL EL  H++ N+V +L GNK+ L+  R   T   +  A+ +GLFF  T
Sbjct:    5 YGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLET 157          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH2.332e-5568.21Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH1.512e-5469.08Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RB2BV_BETVU1.240e-4857.99Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11E_LOTJA2.114e-4861.54Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_LOTJA2.761e-4863.40Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC6.152e-4862.09Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ8.034e-4862.58Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1B_ARATH3.053e-4762.18Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RGP1_ORYSJ3.987e-4761.44Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11C_TOBAC3.987e-4761.44Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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