DY258612

Overview
NameDY258612
Unique NameDY258612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1026
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_ARATH (Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 1.116e-77
Identity = 137/181 (75.69%), Postives = 155/181 (85.64%), Query Frame = 3
Query:   81 GRSPGGSHQLLIDDDLKEMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNPIPHQQFQFTSSEFITYSTVR 623
            G+  GG+++L+IDDDL+EMGKN A SVSSCKPGNGV+ LRDDNL+TY QSDG QPHL+NI             YVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TFVNTFMLQI +LSNHLNGRDTH+RQIK+ GPRPNPIPHQ FQFTS EF+TYST+R
Sbjct:   12 GKISGGNYKLIIDDDLREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_HUMAN (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.597e-42
Identity = 90/184 (48.91%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   72 PNNGRSPGGSHQLLIDDDLKEMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNPIPHQQFQFTSSEFITYSTVR 623
            PN         QL     ++E+G     S+SSCKPG GV  LRDDNL+TY QSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKI  P       +  + T+ +F+ Y ++R
Sbjct:    4 PNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_MOUSE (Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.392e-42
Identity = 90/184 (48.91%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   72 PNNGRSPGGSHQLLIDDDLKEMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNPIPHQQFQFTSSEFITYSTVR 623
            PN         QL     ++E+G     S+SSCKPG GV  LRDDNL+TY QSDG+QPHLVNI             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKI  P       +  + T+ +F+ Y ++R
Sbjct:    4 PNKTPPGADPKQLERTATVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_BOVIN (Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.430e-42
Identity = 89/184 (48.37%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   72 PNNGRSPGGSHQLLIDDDLKEMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNPIPHQQFQFTSSEFITYSTVR 623
            PN         QL     ++E+G     S+SSCKPG GV  LRDDNL+TY QSDG+QPHLVN+             Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+NH NGRDTH+RQIKI  P       +  + T+ +F+ Y ++R
Sbjct:    4 PNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNLQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_DROME (Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=CG11419 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 9.559e-37
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 3
Query:  126 LKEMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGP-RPNPIPHQQF-QFTSSEFITYSTVR 623
            ++E+G     S+SSCKPG GV  LRD+ +DTY QSDG  PHLVNI             Y D+KLDESYTPS+IS+R+G  F++L+E++ ++L +PTGWV I +   + +   + TFMLQI V+SNH NGRDTH+RQI+I+ P      P + F +F + +F  ++T+R
Sbjct:   30 VREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRTFMLQIAVISNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR 195          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_DICDI (Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.209e-31
Identity = 75/165 (45.45%), Postives = 105/165 (63.64%), Query Frame = 3
Query:  132 EMGKNPA*SVSSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNPIPHQQF-QFTSSEFITYSTVR 623
            E+GK+ + SVSS KPG+GV  LRD+NLDT+ QSD  QPH + I             + D+KLDESYTP KIS++AG   H+L+EI   EL +P+GW+ I LS N   +  +   +LQI +LSN  NGRD+H+RQIK+ G + +   + Q+ +F S E   + T+R
Sbjct:   27 EIGKHASWSVSSAKPGSGVEQLRDNNLDTFWQSDAQQPHHITIQFPKKCYIENLLIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFN---NNSLKANLLQISILSNLKNGRDSHIRQIKVYGKKISIENYTQYPKFNSPEVSMFQTLR 188          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_SCHPO (Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe GN=apc10 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.968e-27
Identity = 62/156 (39.74%), Postives = 98/156 (62.82%), Query Frame = 3
Query:  162 SSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGP--RPNPIPHQQFQFTSSEFITYSTVR 623
            SS K G  +  +RDDN+DTY QSDG+QPH ++I             Y+ + LDESYTPS + + AG GF +L+ + TV++ +PTGWV++ + G+  R+  ++  ++QI +L+NH +G+D+HVR IKI  P      I   +  +TS +FI+ + +R
Sbjct:   35 SSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPV-GDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPAIAVDEIPYTSLQFISRNQLR 189          
BLAST of DY258612 vs. ExPASy Swiss-Prot
Match: APC10_YEAST (Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae GN=DOC1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.616e-15
Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 3
Query:  162 SSCKPGNGVSALRDDNLDTYGQSDGAQPHLVNIXXXXXXXXXXXXXYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKINGPRPNP 563
            SS K GN V    DDN DT+ QSDG QPH ++I             +     DESY PS + V AG    + +  K +E+    GWV +    N   D  +    ++++   NH NG+DTH+R I++  P   P
Sbjct:   93 SSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 226          
The following BLAST results are available for this feature:
BLAST of DY258612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APC10_ARATH1.116e-7775.69Anaphase-promoting complex subunit 10 OS=Arabidops... [more]
APC10_HUMAN2.597e-4248.91Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
APC10_MOUSE3.392e-4248.91Anaphase-promoting complex subunit 10 OS=Mus muscu... [more]
APC10_BOVIN4.430e-4248.37Anaphase-promoting complex subunit 10 OS=Bos tauru... [more]
APC10_DROME9.559e-3747.02Anaphase-promoting complex subunit 10 OS=Drosophil... [more]
APC10_DICDI1.209e-3145.45Anaphase-promoting complex subunit 10 OS=Dictyoste... [more]
APC10_SCHPO8.968e-2739.74Anaphase-promoting complex subunit 10 OS=Schizosac... [more]
APC10_YEAST4.616e-1534.33Anaphase-promoting complex subunit DOC1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CD12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258612 ID=DY258612; Name=DY258612; organism=Citrus clementina; type=EST; length=1026bp
GGCATGGTCAGCTTTTGCCGAGTGGATTCCTCAGTGTCAGGAACGAATGA
CGACGCAAACACCAAAGTCGCCCTAATAATGGAAGATCTCCGGGAGGAAG
TCATCAGTTACTAATTGATGACGATCTAAAAGAAATGGGAAAAAACCCTG
CTTGAAGCGTCAGCTCTTGCAAGCCTGGCAATGGCGTCTCTGCTCTTCGC
GATGACAATCTCGATACTTATGGGCAATCGGACGGTGCTCAGCCTCATTT
GGTTAATATTCAGTTCCAGAAGAAAGTTAAGTTGCAATTAGTTGTGCTTT
ATGTGGATTTTAAGCTTGATGAGAGCTATACACCTAGTAAAATCTCTGTT
CGAGCAGGTGATGGTTTTCATAACTTGAAGGAGATAAAAACTGTGGAACT
TGTCAAGCCAACTGGGTGGGTCTATATATCGTTATCTGGAAATGATCCTA
GGGACACTTTTGTCAACACTTTTATGTTGCAAATTGTTGTGTTGTCAAAC
CATCTTAATGGGAGGGATACTCATGTGCGCCAGATCAAAATTAATGGACC
TCGACCGAACCCCATTCCACATCAACAGTTTCAGTTTACATCAAGTGAGT
TTATCACTTACTCTACTGTGAGGTGAGGTCAGAAATTTGCCGCATAGTGA
AAGATCTTAATAGCCTCGTGGCATTTGCTGTGGGAAATAAAGCTTTGAAA
CTCCAAAAATATTCAAATAATATAAGATTTTTAACCTTGTCTTCGAGGCA
TGCACTACTCTAGTGTTAAGAAGTTAATGATCTCATATGGAAACTGGTTA
TCCCTTACCCTTAGGAAGTTCCGTAATTCCCCAACTACTGGCTATGGTCC
CTCCCCCCAAGTAAATAGGGCCCCTCCCTCAAGGTAAACCCAAACCCGAT
TAAAAAAAAAAAAGAACGGGAAGGAAAAAAAAAAAATGGGAAGGCGAGGC
TGCCAGTTAATTTAAACCGGCCTTCTTAAAAATTTTCCCGGCCTGGGTTG
GTTTAAATGCCAACCTTGTTTTTTTC
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