DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1189 contig Ccv1_Contig1189:1..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 5.321e-79
Identity = 159/257 (61.87%), Postives = 193/257 (75.10%), Query Frame = 1
Query:  175 KMEMSLTASSFSKPLFFSNQSLSKTHFLXXXXXXXXXXXIKTRRPTCIKAANS-SPSIAQTLSTNWDVSNFAVNNNTSSPY-LPKFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            +M + L +SS S P+   N   +    +            KT +P C++++ S S    QTLS+NWDVS+F++++   SP  LP FEELDTTNMLLRQRI+FLGSQVDD+TAD +ISQLL LDAEDS++DI LFINSPGGS+TAGMGIYDAMK CKADVST+CLGLAASMGAFLLA+GSKGKRYCMPN++VMIHQPLGTAGGKAT+MSIRIREM Y ++    I   SR  G+   + E DTDRDNF + WEA+E G
Sbjct:    2 EMSLRLASSSTSNPICLLNPGKNLNFPIRNHRIP------KTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIF--SRITGKPESEIESDTDRDNFLNPWEAKEYG 250          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.120e-44
Identity = 96/168 (57.14%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RIIFLGS +DD  A+ I+SQLLFL AED +KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ VMIHQPLG A G+AT++ I  + + + R     I+  +   GQ  E+   DTDRDNF  A +A+E G
Sbjct:   19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRIL--AENTGQPIEVIERDTDRDNFMTAQKAQEYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.910e-44
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RIIFLGS +DD  A+ +I+QLLFL+AED  KDI L+INSPGGS+TAGM IYD ++  + DVSTIC+GLAASMGAFLLAAG KGKRY +PNA +MIHQP G   G+ATD+ I  R +   + S   I+  + + GQ  E    DTDRD F  A EA+E G
Sbjct:   20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKIL--AERTGQPLERIQKDTDRDYFMTAQEAKEYG 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.495e-44
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RI+FLGS +DD  A+ I+SQLLFL AED  KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG A G+AT++ I  + + + R     I+  S   GQ  E+   DTDRDNF  A +A E G
Sbjct:   19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRIL--SENTGQPIEVIERDTDRDNFMTAQKAMEYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.495e-44
Identity = 94/168 (55.95%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AED +KDI+L+INSPGGSVTAGM IYD M+    DV+TIC GLAASMGAFLL+ G++GKR  +P+AR+MIHQPLG A G+A D+ I+ RE+ Y + +  D++  ++  GQ   + E+DTDRD F    EA+  G
Sbjct:   53 DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLL--AQHTGQPLEKIEVDTDRDFFMSPEEAKAYG 218          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.495e-44
Identity = 94/168 (55.95%), Postives = 125/168 (74.40%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AED +KDI+L+INSPGGSVTAGM IYD M+    DV+TIC GLAASMGAFLL+ G++GKR  +P+AR+MIHQPLG A G+A D+ I+ RE+ Y + +  D++  ++  GQ   + E+DTDRD F    EA+  G
Sbjct:   53 DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLL--AQHTGQPLEKIEVDTDRDFFMSPEEAKAYG 218          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.495e-44
Identity = 98/168 (58.33%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LLR+RIIFLG QVD   A+ I++QLLFLDAED +KDI L+INSPGGSVTAGMGI+D MK  + DV TIC GLAASMGAFLL+AG+KGKR  +P++R+MIHQPLG A G+ATD+ I+ RE+ Y +    D +  +   GQ  E    DT+RD F    EAR+ G
Sbjct:   18 DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEIQAREILYHKRRLNDYL--AEHTGQPIERIAEDTERDFFMSPDEARDYG 183          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.256e-44
Identity = 105/255 (41.18%), Postives = 153/255 (60.00%), Query Frame = 1
Query:  169 NKKMEMSLTASSFSKPLFFSNQSLSKTHFLXXXXXXXXXXXIKTRRPTCIKAANSSPSIAQTLSTNWDVSNFAVNNNTSSPYLPKFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*S-SRKAGQQNELDTDRDNFWDAWEARESG 930
            +  ++ SL +S  +     S+ S  K + L           ++T  P+ ++ AN+S  ++QT  +       A+             E D   +LLR+RI+FLGS +DD  AD I+SQLL LDA+D KKDI+LFINSPGGS++A M IYD ++L +ADVSTI LG+AAS  + +L AG+KGKR+ MPN R+MIHQPLG A G+A D+ I+ +E+ + + + T II   + ++ +Q   D DRD +    EA E G
Sbjct:    7 SSSLKPSLVSSRLNSSSSASSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFANASIEMSQTQES-------AIRG----------AESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYG 244          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_ANOFW (ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.558e-44
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +KDI L+INSPGGS+TAGM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG   G+AT++ I  + + + R     I+  S   GQ  E+   DTDRDNF  A +A+E G
Sbjct:   19 DIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEIAAKRILFLRDKLNRIL--SENTGQPIEVIERDTDRDNFMTAEKAKEYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG A G+AT++ I  + + + R     I+  +   GQ  E+   DTDRDNF  A +A+E G
Sbjct:   19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRIL--AENTGQPVEVIERDTDRDNFMTAQKAQEYG 184          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_ARATH5.321e-7961.87ATP-dependent Clp protease proteolytic subunit 3, ... [more]
CLPP_GEOTN1.120e-4457.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNWW1.910e-4457.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOKA2.495e-4456.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNP62.495e-4455.95ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNE72.495e-4455.95ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_ANAVT2.495e-4458.33ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP4_ARATH4.256e-4441.18ATP-dependent Clp protease proteolytic subunit 4, ... [more]
CLPP_ANOFW5.558e-4456.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW7.259e-4455.95ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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