DY258639

Overview
NameDY258639
Unique NameDY258639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258639_ssr123 microsatellite DY258639_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1190 contig Ccv1_Contig1190:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.690e-47
Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:  205 SSNDNKHCEEND---AMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVN-ERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPR 639
            SS+D     +N    A A+   PA KA+VVGWPPVR++RKNA+  + KFVKVAV+GAPYLRKVDLE Y  Y +LL AL+D  FS  TIR   + ERK++D VNG EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RL KSSEA+ LAPR
Sbjct:   49 SSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNAL--AAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.883e-47
Identity = 103/205 (50.24%), Postives = 128/205 (62.44%), Query Frame = 1
Query:  145 RTKAGTKRGFLETVDLNLMGSSNDNKHCE--------ENDAMASTTTPATKAQVVGWPPVRAYRKNAMK---------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            ++  G KRGF ETVDL L   SN   H +        E   +   + P  KAQVVGWPPVR YRKN M                G+  FVKV+++GAPYLRKVDL++Y SY++L  AL  MFS  T+ ++        +NE K++D +N  EYVP+YEDKDGDWMLVGDVPW MFVESCKR+R+ K SEAIGLAPR   K  ++S
Sbjct:   24 KSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 7.100e-46
Identity = 102/201 (50.75%), Postives = 126/201 (62.69%), Query Frame = 1
Query:  157 GTKRGFLETVDLNL-MGSSNDNKHC------------EENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH---------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            G KRGF ETVDL L + +   NK              E++        P  KAQVVGWPPVR+YRKN M    K         FVKV+++GAPYLRK+DL +Y SY EL +AL +MFS  T+  H         +NERK++D VN  +YVP+YEDKDGDWMLVGDVPW MFV++CKR+RL K S+AIGLAPR   K  S++
Sbjct:   29 GNKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSRA 229          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.211e-45
Identity = 102/212 (48.11%), Postives = 127/212 (59.91%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLMGSSNDNKHCEENDA---MASTTTPATKAQVVGWPPVRAYRKNAMKG-----------------------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            K   KRGF ETVDL L  SS       + D          P  KAQVVGWPPVR++RKN M G                             +  +VKV+++GAPYLRK+DL++Y +YQ+L +AL  MFS  TI N+        +NE K+ID +NG +YVPTYEDKDGDWMLVGDVPW+MFV+SCKR+R+ K SEAIGLAPR   K  ++S
Sbjct:   25 KNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.698e-45
Identity = 94/155 (60.65%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  205 SSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM-------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALED-MFSFLTIRNHVNER-KIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRT 642
            S+ D+       + A+ + P+ KA+VVGWPPVRA+RKNA+           KFVKVAV+GAPYLRKVDLE Y  Y +LL+AL+D  FS  TIR   NE  K++D V+G EYVPTYEDKDGDWMLVGDVPWKMFVE+C+R+RL KSSEA+ LAPR+
Sbjct:   57 SATDDDPDNRLGSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.088e-44
Identity = 101/209 (48.33%), Postives = 126/209 (60.29%), Query Frame = 1
Query:  145 RTKAGTKRGFLETVDLNLMGSSN-----DNKHC----EENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-----------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH--------VNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAK 651
            ++  G+KRGF ETVDL L   SN     D K+     +E   +   + P  KAQVVGWPPVR YRKN M                             VKV+++GAPYLRKVDL++Y SYQ+L  AL  MFS  T+ N+        +NE K+++ +N  EYVP+YEDKDGDWMLVGDVPW+MFVESCKR+R+ K SEA+GLAPR   K
Sbjct:   29 KSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.596e-43
Identity = 95/162 (58.64%), Postives = 110/162 (67.90%), Query Frame = 1
Query:  265 ATKAQVVGWPPVRAYRKNAM-----KG----------------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN-------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            A KAQVVGWPPVR+YRKN +     KG                +  FVKV+++GAPYLRKVDL++Y SY EL  ALE MFS  TI N        +NE KI D +NG EYVPTYEDKDGDWMLVGDVPW+MFVESCKR+R+ K SEAIGLAPR   K  ++S
Sbjct:  116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.061e-41
Identity = 90/173 (52.02%), Postives = 113/173 (65.32%), Query Frame = 1
Query:  247 ASTTTPATKAQVVGWPPVRAYRKNAMKGS-----------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            +S T PA+KAQVVGWPP+R++RKN+M  S                       C +VKV++EGAPYLRK+DL+ Y SY EL SALE MFS  TI          R+ +NE ++ D + G EYV TYEDKD DWMLVGDVPW+MF+ SCK++R+ KSSEAIGLAPR   K  S++
Sbjct:  133 SSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 86/143 (60.14%), Postives = 101/143 (70.63%), Query Frame = 1
Query:  247 ASTTTPATKAQVVGWPPVRAYRKNAMK---GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRN----HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAK 651
            A    P+ KA+ VGWPPVRAYR+NA++      K VKVAV+GAPYLRKVDL  +  Y  LL AL  MF S L +R          K++D V G EYVPTYEDKDGDWMLVGDVPWKMFVESCKR+RL KSSEA+ L+PR  ++
Sbjct:   51 ADAKPPSPKARAVGWPPVRAYRRNALREDSARAKLVKVAVDGAPYLRKVDLAAHAGYAPLLRALHGMFASCLAVRGGGGGDGEGTKLVDLVTGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPRRSSR 193          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.001e-40
Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLMGSSNDNK---------HCEENDAMASTTTPATKAQVVGWPPVRAYRKN-------AMKGS------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI----------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            K G KRGF + +     G   +             EE +       PA KAQVVGWPP+R+YRKN       A+KG             C +VKV+++GAPYLRKVDL++Y +Y+EL  ALE MFS  T+          R+ +++ +++D  NG E V TYEDKD DWMLVGDVPW+MF +SC+R+R+ K S+A+GLAPR   K+ +++
Sbjct:   57 KGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
The following BLAST results are available for this feature:
BLAST of DY258639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA1_ORYSJ1.690e-4765.33Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA14_ARATH2.883e-4750.24Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA17_ARATH7.100e-4650.75Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA16_ARATH1.211e-4548.11Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA15_ORYSJ2.698e-4560.65Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA7_ARATH5.088e-4448.33Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA30_ORYSJ9.596e-4358.64Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA27_ARATH1.061e-4152.02Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA23_ORYSJ2.001e-4060.14Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA21_ORYSJ2.001e-4042.86Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258639 ID=DY258639; Name=DY258639; organism=Citrus clementina; type=EST; length=896bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACCATCAGATTTTGATCAGTTGATATTAGAGAAATAAGGAGAGCCCTGCT
GCCTGTAATTATATATCATATAATATCAGAAGTTACTTACGGGAAT
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