DY258650

Overview
NameDY258650
Unique NameDY258650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1192 contig Ccv1_Contig1192:1..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.266e-80
Identity = 137/150 (91.33%), Postives = 146/150 (97.33%), Query Frame = 3
Query:    3 LCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGNNMLRPGTPPH 452
            LCMHGGLSP+LKNLDQIRNIARP+DVPD GLLCDLLWADPDKD+EGWGENDRGVS+TFGADKVVEFL+ HDLDLICRAHQVVEDGYEFFAKR+LVTVFSAPNYCGEFDNAGAMMSVDD+LTCSFQILK+S+KKGKVGFGNN  RPGTPPH
Sbjct:  167 LCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPH 316          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 4.000e-77
Identity = 130/150 (86.67%), Postives = 142/150 (94.67%), Query Frame = 3
Query:    3 LCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGNNMLRPGTPPH 452
            LCMHGGLSPD+K+LD IR I RP+DVPDQG+LCDLLWADPD++I+GWGENDRGVSYTFGADKV EFLQ HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAGA+MSVDD+LTCSFQILKASEKKG+ GF NN+ RPGTPPH
Sbjct:  167 LCMHGGLSPDIKSLDDIRRIPRPIDVPDQGILCDLLWADPDREIQGWGENDRGVSYTFGADKVAEFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDDSLTCSFQILKASEKKGRFGFNNNVPRPGTPPH 316          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.341e-75
Identity = 130/149 (87.25%), Postives = 137/149 (91.95%), Query Frame = 3
Query:    3 LCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGNNMLRPGTPP 449
            LCMHGGLSP+LK+LD+IRNI RP D+PD GLLCDLLW+DPDKDIEGWGENDRGVSYTFGADKV EFLQ HDLDLICRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDD+LTCSFQILKASEKKG  GFG N  R GTPP
Sbjct:  167 LCMHGGLSPELKHLDEIRNIPRPADIPDHGLLCDLLWSDPDKDIEGWGENDRGVSYTFGADKVEEFLQTHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKASEKKGNFGFGKNAGRRGTPP 315          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.990e-68
Identity = 123/151 (81.46%), Postives = 131/151 (86.75%), Query Frame = 3
Query:    3 LCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGNNMLR---PGTP 446
            LCMHGGLSP+LK L+QIR I RP DVPD GLLCDLLWADPDKD++GWGENDRGVSYTFG D V EFLQ+HDLDL+CRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAGA+MSVDDTL CSFQILK SEKKGK   G N L     GTP
Sbjct:  167 LCMHGGLSPELKTLEQIRRIPRPTDVPDTGLLCDLLWADPDKDVQGWGENDRGVSYTFGPDTVTEFLQRHDLDLVCRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDDTLMCSFQILKPSEKKGKFMQGGNSLAGAGRGTP 317          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP12_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.200e-67
Identity = 121/151 (80.13%), Postives = 132/151 (87.42%), Query Frame = 3
Query:    3 LCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGNNMLR---PGTP 446
            +CMHGGLSP+LK+LD IR+I RP DVPD GLLCDLLW+DPDKD+ GWGENDRGVSYTFG D V  FLQKHDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAGA+MSVDDTL CSFQILK SEKKGK+ +G+  L     GTP
Sbjct:  167 ICMHGGLSPELKSLDAIRHIPRPTDVPDTGLLCDLLWSDPDKDVAGWGENDRGVSYTFGPDTVTGFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDDTLMCSFQILKPSEKKGKLLYGSGALAGPGRGTP 317          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1B_XENTR (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus tropicalis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:    6 CMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGN-NMLRPGTPP 449
            C HGGLSPDL++++QIR I RP DVPD GLLCDLLW+DPDKD++GWGENDRGVS+TFGAD V +FL +HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAG MMSVD+TL CSFQILK SEKK K  +G  N  RP TPP
Sbjct:  170 CCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPP 318          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1B_XENLA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus laevis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:    6 CMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGN-NMLRPGTPP 449
            C HGGLSPDL++++QIR I RP DVPD GLLCDLLW+DPDKD++GWGENDRGVS+TFGAD V +FL +HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAG MMSVD+TL CSFQILK SEKK K  +G  N  RP TPP
Sbjct:  170 CCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPP 318          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1B_RAT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Rattus norvegicus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:    6 CMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGN-NMLRPGTPP 449
            C HGGLSPDL++++QIR I RP DVPD GLLCDLLW+DPDKD++GWGENDRGVS+TFGAD V +FL +HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAG MMSVD+TL CSFQILK SEKK K  +G  N  RP TPP
Sbjct:  170 CCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPP 318          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:    6 CMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGN-NMLRPGTPP 449
            C HGGLSPDL++++QIR I RP DVPD GLLCDLLW+DPDKD++GWGENDRGVS+TFGAD V +FL +HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAG MMSVD+TL CSFQILK SEKK K  +G  N  RP TPP
Sbjct:  170 CCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPP 318          
BLAST of DY258650 vs. ExPASy Swiss-Prot
Match: PP1B_PONAB (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Pongo abelii GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.419e-66
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:    6 CMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVVEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKGKVGFGN-NMLRPGTPP 449
            C HGGLSPDL++++QIR I RP DVPD GLLCDLLW+DPDKD++GWGENDRGVS+TFGAD V +FL +HDLDLICRAHQVVEDGYEFFAKRQLVT+FSAPNYCGEFDNAG MMSVD+TL CSFQILK SEKK K  +G  N  RP TPP
Sbjct:  170 CCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRPVTPP 318          
The following BLAST results are available for this feature:
BLAST of DY258650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
PP1_MEDVA2.266e-8091.33Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP16_ARATH4.000e-7786.67Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP13_ARATH8.341e-7587.25Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP11_ACECL1.990e-6881.46Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP12_ACECL2.200e-6780.13Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP1B_XENTR5.419e-6678.52Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_XENLA5.419e-6678.52Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RAT5.419e-6678.52Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RABIT5.419e-6678.52Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PONAB5.419e-6678.52Serine/threonine-protein phosphatase PP1-beta cata... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2DC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258650 ID=DY258650; Name=DY258650; organism=Citrus clementina; type=EST; length=826bp
TTCTATGTATGCATGGTGGGTTATCTCCTGATTTGAAAAATTTGGATCAG
ATCAGGAATATTGCTCGCCCTGTTGATGTGCCAGATCAGGGCCTTCTTTG
TGATTTGTTGTGGGCTGATCCTGACAAAGATATTGAGGGCTGGGGAGAGA
ATGACAGGGGTGTGTCCTACACCTTTGGGGCTGACAAGGTTGTTGAATTC
CTTCAGAAGCATGACCTTGATCTTATCTGTCGAGCTCATCAGGTTGTGGA
AGATGGTTATGAATTTTTTGCAAAGCGTCAGCTTGTGACTGTATTCTCTG
CACCAAATTACTGTGGCGAATTTGATAATGCCGGTGCCATGATGAGTGTG
GATGATACATTGACATGCTCCTTTCAGATCCTTAAGGCGTCTGAGAAGAA
AGGAAAAGTTGGATTTGGCAATAACATGTTGAGACCCGGAACTCCTCCCC
ATAAGGGTGGGAAGGGGTGATTGGATTGATTTGACTGATACCAATGATCT
GAAGGATGAAGGGCATAGTTCATATCCTGGCTTTCTGTACTTGTTTGGTT
GGCGTGACTAGTCGCAGAGTCAGTCAAGCCTTTTTGGGCACTTAAGAAGG
GATGTCAAGACATGAGAGTTTCTGCAACGGTGTGTGACGATAGCTGAGTT
ATTAATTGCAGTAAAACCTGTGGTCTTTGTTTTTTCATCATGTAAAATGG
GAATTCTAACTTCATAATGCTGAATTGCACCATTGGTGTAGATGCACTAT
TTTTGTTTTCTCTGTTTTCATTTTCATTTTGTTGTAGTTTGTTAATTATC
CTGCTAATCCAATGCAAATTGATTTT
back to top