DY258661

Overview
NameDY258661
Unique NameDY258661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig63 contig Ccv1_Contig63:82..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258661 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.900e-26
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 2 
Query:    2 EDIVNGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 256
            ++I+ G++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:   21 DEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of DY258661 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 2 
Query:    2 EDIVNGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 235
            E+++ G   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:   26 EELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of DY258661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH9.900e-2662.35Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH1.255e-1239.74Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DF12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258661 ID=DY258661; Name=DY258661; organism=Citrus clementina; type=EST; length=553bp
GGAGGATATTGTCAATGGGATGAAAAAGCTAGTTTCAGAGATTGATGCTG
TCAAATCTTTTGAATGGGGCCAAGATGTAGAAGGGCAGGAGATGCTTAGG
CAAGGCTTCACACATGCATTCTTGATGACATTCAACAAGAAGGAAGACTA
TACAACCTTTGCAAGCCATCCCAGCCACGTCGAATTCTCGGCTACATTTT
CAGCTGCTATTGAGAAGATTGTCCTGCTTGATTTCCCTACCGTGCTTGGC
AAAGCACCAGCAGCATGACACTCCAAAATTCTAGGCGATAATAATTAAGT
GAGATTAGTATTAATCTGCTATATGCGTGTGTATGTTTGGTTTGCTTATC
TCTATGAGTTAATATTATTATTTGCCAGTATCAGTAACTATTTGGTTTGT
CACAATATATAGCCTTATTATAAGTTCTTTAATTCTGCAATTTCAACCAG
CTGTATTATGGACACATATGTTGTATGCATGTAGCTTGATTGTGGAATTT
GGTAAATGCTAGAGCCTAGAAATCACTTTTCCTCCCTTCNNAAAAAAAAA
AAA
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