DY258669

Overview
NameDY258669
Unique NameDY258669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14555 contig Ccv1_Contig14555:9..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 3.940e-83
Identity = 154/203 (75.86%), Postives = 180/203 (88.67%), Query Frame = 3
Query:   57 SSSRQFINGFSPKPTSMSFSHSSSLKGFGTQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 665
            SSS  +I+G S    S + S SSS  GF + +A+E++ R SFVQT AVRH+TG L + EGLRFA+VVARFNE+VTKLLLEGA+ETFKKYSV+EE+I+V+WVPGSFEIGVVAQ LGKSGK++AVLCIGAV+RGDTTHYDAVANSAASGVLSA +NSGVPCIFGVLTC++MDQALNR+GGK+GNKGAE ALTA+EMASLFEHHLK
Sbjct:   25 SSSACYIHGGSSVNKSNNLSFSSSTSGFASPLAVEKELRSSFVQTAAVRHVTGSLIRGEGLRFAIVVARFNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAVIRGDTTHYDAVANSAASGVLSASINSGVPCIFGVLTCEDMDQALNRSGGKAGNKGAETALTALEMASLFEHHLK 227          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 2.167e-73
Identity = 137/191 (71.73%), Postives = 162/191 (84.82%), Query Frame = 3
Query:   96 PTSMSFSHSSSLKGFG-TQIAIERKERLSFVQTEAVRHLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK 665
            P S   S SSS  G G   +A  +K R SFV T AVR L G++TK +  RFA+VVARFNE VT+ L+EGAL+TFKKYSV E+ IDVVWVPG++E+GV AQ LGKSGKY+A++C+GAVV+GDT+HYDAV NSA+SGVLSAG+NSGVPC+FGVLTCDNMDQA+NRAGGK+GNKGAE+ALTAIEMASLFEHHLK
Sbjct:   32 PFSAPLSSSSSFPGCGLVHVASNKKNRASFVVTNAVRELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 221          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_EXIS2 (6,7-dimethyl-8-ribityllumazine synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ribH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.312e-41
Identity = 83/145 (57.24%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  213 GFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GFLT  EGLR A+V ARFNEL+T  L+ GA + F+++ V  + +D  WVPG+FEI +VA++L KSG Y+AV+ +GAV+RG T+HYD V N  A GV  A   +GVP IFGVLT D+++QA+ RAG K+GNKG EAA++AIEMA+L
Sbjct:    5 GFLT-GEGLRVAIVAARFNELITSKLVGGANDAFRRHGVAADAVDTAWVPGAFEIPLVAEKLAKSGNYDAVITLGAVIRGATSHYDYVCNEVAKGVAGASRETGVPIIFGVLTTDSIEQAVERAGTKAGNKGYEAAVSAIEMANL 148          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_PELTS (6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ribH PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.125e-40
Identity = 78/150 (52.00%), Postives = 111/150 (74.00%), Query Frame = 3
Query:  204 HLTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            HL G     +GLRF +V+ RFNE +T  LL GAL+   ++ V +++I+V WVPG+FEI +VA+++  + KY+AV+C+GAV+RG T H+D VA   A GV   G+ SGVP IFGV+T D+++QA+ RAG K+GNKG +AA+TAIEMA+L +
Sbjct:    8 HLIG-----QGLRFGIVIGRFNEFITNKLLSGALDALNRHGVADQDIEVAWVPGAFEIPMVARKMASAMKYDAVICLGAVIRGATPHFDYVAGEVAKGVARIGLESGVPTIFGVITADSIEQAIERAGAKAGNKGWDAAVTAIEMANLMK 152          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ANOFW (6,7-dimethyl-8-ribityllumazine synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=ribH PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.388e-40
Identity = 79/138 (57.25%), Postives = 108/138 (78.26%), Query Frame = 3
Query:  234 GLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            GL+  +VVARFNE +T  LL GAL+  K++ V+E++IDV WVPG+FEI +VA+++ +S KY+AV+ +GAV+RG T+HYD V N  A G   A ++SGVP IFGVLT D ++QA+ RAG K+GNKG EAAL+AIEMA++
Sbjct:   12 GLKIGIVVARFNEFITSKLLSGALDGLKRHGVEEQHIDVAWVPGAFEIPLVAKKMAESKKYDAVITLGAVIRGATSHYDYVCNEVAKGTSHAALSSGVPVIFGVLTTDTIEQAIERAGTKAGNKGWEAALSAIEMANV 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.036e-40
Identity = 74/140 (52.86%), Postives = 109/140 (77.86%), Query Frame = 3
Query:  228 NEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            +EGL+F +VV RFNE +   LLEGA++  K++ VKEE+ID+ WVPG+FEI ++A+++ KS KY+ V+C+GAV++G T+HYD V +  + G+ S  + SG P IFGVLT + ++QA+ RAG K+GNKG E+A++AIEMA+L
Sbjct:   10 SEGLKFGIVVGRFNEFIGGKLLEGAIDGLKRHGVKEEDIDIAWVPGAFEIPLIAKKMAKSPKYDGVICLGAVIKGSTSHYDYVCSEVSKGIASVSLESGKPVIFGVLTTNTIEQAIERAGTKAGNKGYESAVSAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ACTP7 (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=ribH PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.190e-40
Identity = 77/149 (51.68%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E NID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIEM ++ +
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGADENNIDTAWVPGAFEIPLVAKKMATSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIEMVNVLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_HAEPS (6,7-dimethyl-8-ribityllumazine synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=ribH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.674e-39
Identity = 76/149 (51.01%), Postives = 109/149 (73.15%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +TG L   E L+F +V ARFN+ +   LL GA++T  ++   E +ID  WVPG+FEI +VA+++ +SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIEM ++ +
Sbjct:    4 ITGNLVATE-LKFGIVCARFNDFINDKLLSGAIDTLVRHGASESDIDTAWVPGAFEIPLVAKKMAESGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVSLQTGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIEMVNVLK 151          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_BACP2 (6,7-dimethyl-8-ribityllumazine synthase OS=Bacillus pumilus (strain SAFR-032) GN=ribH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.674e-39
Identity = 76/139 (54.68%), Postives = 109/139 (78.42%), Query Frame = 3
Query:  231 EGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASL 647
            EGL+FA+VVARFN+ +T  LL+GA +T  ++    ++IDVVWVPG+FEI  +A++L ++ KY+AV+ +G V+RG TTHYD V N AA G+  + M++GVP IFGVLT ++++QA+ RAG K+GNKG+E+A  AIEMA+L
Sbjct:   11 EGLKFAIVVARFNDFITSKLLDGAEDTLLRHGANGDDIDVVWVPGAFEIPYMAKKLAETEKYDAVITLGTVIRGATTHYDYVCNEAAKGIAQSAMSTGVPIIFGVLTTESIEQAIERAGTKAGNKGSESAAAAIEMANL 149          
BLAST of DY258669 vs. ExPASy Swiss-Prot
Match: RISB_ACTPJ (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.674e-39
Identity = 76/149 (51.01%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  207 LTGFLTKNEGLRFALVVARFNELVTKLLLEGALETFKKYSVKEENIDVVWVPGSFEIGVVAQQLGKSGKYNAVLCIGAVVRGDTTHYDAVANSAASGVLSAGMNSGVPCIFGVLTCDNMDQALNRAGGKSGNKGAEAALTAIEMASLFE 653
            +TG L    GL+F +V ARFN+ +   LL GA++T  ++   E NID  WVPG+FEI +VA+++  SGKY+AV+C+G V+RG TTHYD V N AA G+ +  + +GVP IFGVLT +N++QA+ RAG K+GNKG+E AL AIE+ ++ +
Sbjct:    4 ITGNLVAT-GLKFGIVTARFNDFINDKLLSGAIDTLVRHGADENNIDTAWVPGAFEIPLVAKKMATSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIEQAIERAGTKAGNKGSECALGAIEIVNVLK 151          
The following BLAST results are available for this feature:
BLAST of DY258669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RISB_ARATH3.940e-8375.866,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_SPIOL2.167e-7371.736,7-dimethyl-8-ribityllumazine synthase, chloropla... [more]
RISB_EXIS28.312e-4157.246,7-dimethyl-8-ribityllumazine synthase OS=Exiguob... [more]
RISB_PELTS4.125e-4052.006,7-dimethyl-8-ribityllumazine synthase OS=Pelotom... [more]
RISB_ANOFW5.388e-4057.256,7-dimethyl-8-ribityllumazine synthase OS=Anoxyba... [more]
RISB_CLOB87.036e-4052.866,7-dimethyl-8-ribityllumazine synthase OS=Clostri... [more]
RISB_ACTP79.190e-4051.686,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]
RISB_HAEPS2.674e-3951.016,7-dimethyl-8-ribityllumazine synthase OS=Haemoph... [more]
RISB_BACP22.674e-3954.686,7-dimethyl-8-ribityllumazine synthase OS=Bacillu... [more]
RISB_ACTPJ2.674e-3951.016,7-dimethyl-8-ribityllumazine synthase OS=Actinob... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258669 ID=DY258669; Name=DY258669; organism=Citrus clementina; type=EST; length=1234bp
TCAGAACAAAAATGGCTTTAAACCTCAAAACAACAATTCATCACTCTCCT
CTCGCATCATCATCTCGTCAATTCATTAATGGGTTTTCTCCAAAACCAAC
TTCTATGTCCTTTTCACATTCTTCTTCACTCAAAGGATTTGGAACCCAGA
TTGCGATTGAGAGGAAGGAACGTTTATCGTTTGTACAAACGGAAGCTGTG
AGGCATTTGACTGGATTCCTTACAAAAAATGAGGGGCTCCGTTTTGCTTT
GGTTGTTGCACGGTTTAATGAGCTTGTGACAAAACTACTGTTAGAGGGAG
CTTTGGAGACCTTCAAGAAGTATTCAGTTAAAGAAGAAAACATTGATGTT
GTGTGGGTTCCTGGTAGTTTTGAAATTGGTGTTGTTGCACAACAGCTAGG
GAAGTCTGGGAAGTATAATGCAGTTTTGTGTATTGGTGCCGTGGTTAGAG
GTGATACTACTCACTATGATGCTGTAGCTAATTCTGCTGCATCCGGAGTT
CTTTCAGCTGGCATGAATTCAGGTGTTCCATGCATATTTGGTGTCCTGAC
TTGCGATAACATGGACCAGGCTTTGAATCGAGCTGGTGGTAAATCTGGGA
ATAAGGGTGCTGAGGCAGCTTTGACTGCTATTGAAATGGCATCTTTATTT
GAGCACCACCTGAAGTAGTGGTTTCACCAAGAAGAGTTGGACAGAGTCCT
TTTTCCGCTCATATTTTCTTTTTGAGAAAGTGGCCTTTTGTTGTAGTTTC
ATGATACCTGAAGCCTTTGTATGGACAGTTTTGGGATCTGCAAAAGGTTA
GCCTTAGCATTCCAAAATAAGATNAGCAAATTGTTCACTGCCTTCATACT
GGGAAACTTTTTCCTGCGCGTCACCCAGATACTGAAAAAACATTCCGTAA
TGTTCTGAATCAAAAACAATCTGGAATTCTGTATGCCTTCCCAAATGTTT
TTTCTAAATGAAAATAATCAAAAAAAAAGGCATTTGCATCCATGAATTGA
GGGCAAAATTGGAGGGAATATATGGGTGGTTTTTTGAAAAAACGAAAAAG
GGGGGACCTTTGCAACCAACCCTAATTTCCCTGGGTTTTGGGGAAAAAAA
ATTTGGATTTCAGGGGGGAAAAAAAAAAAAAAAGAAAAAGGGGGTATGGG
GTAAAGGTCTTTTGTCTTTGGAAATTTGTCCTAAATTTTTGCCTTATTTT
AGGTAAAATATTTTTCTTTTTTTTTTTTTTTTTA
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