DY258676

Overview
NameDY258676
Unique NameDY258676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1309
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY258676 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.201e-25
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  248 HGKSPR------RAIRKKNNKQVGNRIINNKIHVLVDHVQPSGRTQEIKLRNKKTDELNVHAKARGDVISTQRPPNGP 463
            HG++ R      RA+  + NKQ+GNRII  +IHV V+HVQ S   +E KLR KK DEL   AKA G+ IST+R P GP
Sbjct:   58 HGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGP 135

HSP 2 Score: 57.3806 bits (137), Expect = 4.201e-25
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  462 PKPGLMVEGATLETVTPIPYHVDNDLKGGY 551
            PKPG MVEG TLETVTPIPY V NDLKGGY
Sbjct:  135 PKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of DY258676 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.569e-24
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  248 HGKSPR------RAIRKKNNKQVGNRIINNKIHVLVDHVQPSGRTQEIKLRNKKTDELNVHAKARGDVISTQRPPNGP 463
            HG++ R      RA+  + NKQ+GNRII  +IHV V+HVQ S   +E KLR K+ D L   AKARG+ IST+R P GP
Sbjct:   58 HGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGP 135

HSP 2 Score: 57.3806 bits (137), Expect = 1.569e-24
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  462 PKPGLMVEGATLETVTPIPYHVDNDLKGGY 551
            PKPG MVEG TLETVTPIPY V NDLKGGY
Sbjct:  135 PKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
The following BLAST results are available for this feature:
BLAST of DY258676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL211_ARATH4.201e-2552.5660S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL212_ARATH1.569e-2451.2860S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AA02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258676 ID=DY258676; Name=DY258676; organism=Citrus clementina; type=EST; length=1309bp
TTTTCTGTCTTTTTTTATTTTCTTGTCAGATTTTGTTTTGCATCAATGTT
TCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGTTGAGCAATTGGG
ATGTTATCTTTCTGCTTAACTGGCTGTGGTGGGTGTTCGGATTTTTATAT
ACATGAAATTGGGGAATACTAACTAAATTGAGAAGTGAACTTTATAGACC
ACCTGCGGGAGGCCAAAGATGGCTGCCATGAATACAATTGGCAATGTCAT
GGAAAGTCACCAAGACGCGCCATCAGAAAAAAGAATAACAAGCAGGTTGG
TAACCGGATCATCAATAATAAGATTCATGTGCTTGTGGATCATGTGCAAC
CATCAGGGCGCACCCAGGAGATCAAGCTGAGGAATAAGAAAACTGATGAA
CTCAACGTACATGCTAAGGCAAGAGGTGATGTCATCAGTACTCAGAGGCC
TCCAAACGGCCCCTAAACCAGGTCTCATGGTGGAAGGCGCAACATTGGAA
ACTGTCACTCCTATTCCATATCATGTCGACAATGATCTTAAGGGTGGTTA
CTAGGTTATCTTTATGATATTGTTGCTGTTTTGTTACTAAGTGCAAACTT
ATTTTGGAGGGGAGTCTTATTTGAATGTCTTTTCCCCCCTTAATAAGTTT
CCGTGTTAGGAGACGAACTGCCAAACCCAGAAAGGCAAAAACAAAAACAT
CATATTACATTAAACAAAAGACAAGGTTTCCCAAAAAAAAAAAAAGAAAA
AAAAGAAACTAACCCTTCTGGCGAAAAGTACGACACTTAACTAATACCAT
TTCCTCTCCCAATCTAGTGCCTCCAAACACACTCTCTTACCAACCTAAAC
CACCACCTCCACACTCCCCCCTCGACCCATTCAATTCCCCGCCTCTCCCG
ACCCTCAAATCACAAACCGTTCACCATGGTCGGCTAGGCGACAATATAAA
CTCCTTCGTATACCACATCACTGTAACTGATTGCTTTTAACTTCCCACAA
ATACAACGTTCCTCGCTCCTCCTTTTCAAACCGCCCCTCACCTCATACTC
TACTAAATCTACACAATCTACCACAAACCAATCATCATTCCTACCCTCTT
CACTCAACACCCTCCCACTAAAAACAAAAACATCCTAAATCTCATTACTA
GAAATCCCATAACAAAAACAAACCCCTATAACCAATCCATGCATACCTAC
TATTAACACCAAAAAATCCCTCTACCACTAGCAACCGTACCCCACAGTAC
TTCATCAAGCTTACATATCTATGTTCAACTCCATTCTCTGCCCATACAGA
TGCATCCTC
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