DY258679

Overview
NameDY258679
Unique NameDY258679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1307
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1199 contig Ccv1_Contig1199:1..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.773e-31
Identity = 84/155 (54.19%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISG 835
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  SSHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS       + A  L G  P S   G    +      F   G+ G
Sbjct:   87 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPAGEVLNAESAFAQAGVEG 240          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.435e-31
Identity = 88/159 (55.35%), Postives = 97/159 (61.01%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGI-SGFSE 844
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  +SHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     TN  PCLPL GTI AS       + A  L G  P S   G           F+  GI SGF E
Sbjct:   81 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPTGEKLNAEEAFRLAGISSGFFE 238          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.434e-30
Identity = 87/159 (54.72%), Postives = 97/159 (61.01%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGIS-GFSE 844
            A S+ VM+SM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  +SHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     TN  PCLPL GTI AS       + A  L G  P S   G           F+  GIS GF E
Sbjct:   86 ASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPTGEKINAEEAFRLAGISTGFFE 243          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.872e-30
Identity = 82/155 (52.90%), Postives = 95/155 (61.29%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISG 835
            A S+ VM+SM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  +SHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     +N  PCLPL GTI AS       + A  L G  P S   G           F+  G++G
Sbjct:   91 ASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPNGETLNAEEAFRVAGVNG 244          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.171e-30
Identity = 74/112 (66.07%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VM+SM  GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  SSHTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     +N  PCLPL GTI AS
Sbjct:   97 ASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITAS 208          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.448e-30
Identity = 85/159 (53.46%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGI-SGFSE 844
            A S+ VM+SM  GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  + HTL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS       + A  L G  P S   G    +      F+  GI SGF E
Sbjct:   91 ASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITRLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKATGPTGEVLDAAEAFKAAGIESGFFE 248          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.115e-30
Identity = 73/112 (65.18%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  S+HTL H+A  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:  101 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITAS 212          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.115e-30
Identity = 74/112 (66.07%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAAS 706
            A S+ VMESM+ GTDSYGVTTGFG +S RR +   AL KELIR LNAG FGNG  S+HTL HSA  AA+LVR+ TLLQG SGIRFEIL  I      N  PCLPL GTI AS
Sbjct:   88 ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITAS 199          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.214e-29
Identity = 86/159 (54.09%), Postives = 96/159 (60.38%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGI-SGFSE 844
            A S+ VM+SM  GTDSYGVTTGFG +S RR +   AL KELIR LN+G FGNG  SSHTL HSA  AA+LVRV TLLQG SGIRFEIL  I      N  PCLPL GTI AS       + A  L G  P S   G   ++      F   G+ SGF E
Sbjct:   96 ASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGSNGQVLNPTEAFNLAGVTSGFFE 253          
BLAST of DY258679 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.214e-29
Identity = 84/155 (54.19%), Postives = 92/155 (59.35%), Query Frame = 2
Query:  371 ACSECVMESMHTGTDSYGVTTGFGVSSRRREEIRSALHKELIRLLNAGTFGNGI*SSHTLLHSAPMAAVLVRVITLLQG*SGIRFEILYPIP*CSITNCPPCLPLLGTIAASWLSGRAFFFARTLNGTDPFSGLPGLMKRIFGVH*TFQPVGISG 835
            A S+ VM+SM  GTDSYGVT GFG +S RR +   AL KELIR LNAG FGNGI S HTL HSA  AA+LVR+ TLLQG SGIRFEIL  I     +N  PCLPL GTI AS       + A  L G  P S   G           F   GISG
Sbjct:   80 ASSDWVMDSMSKGTDSYGVTAGFGATSHRRTKNGGALQKELIRFLNAGVFGNGIESFHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGR-PNSKAVGPNGEKLNAEEAFCVAGISG 233          
The following BLAST results are available for this feature:
BLAST of DY258679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PALY_HELAN3.773e-3154.19Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL2_LITER6.435e-3155.35Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]
PAL1_LITER1.434e-3054.72Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]
PAL1_TOBAC1.872e-3052.90Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL5_SOLLC4.171e-3066.07Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PALY_POPTR5.448e-3053.46Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PALY_TRISU7.115e-3065.18Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PALY_DIGLA7.115e-3066.07Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PALY_CITLI1.214e-2954.09Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL1_SOLLC1.214e-2954.19Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258679 ID=DY258679; Name=DY258679; organism=Citrus clementina; type=EST; length=1307bp
GTTAAGCTATCTTTTTACGGCTAGGAATATGACAGTAGGTTGAACTGGCA
GTTGCCACTTGCGGCTGTTACTGCCGCTGCTGTGGTTTGTGTTTGCTATG
CTAGGTGCTGGTGATTGCACGCTGCCCCTGTAGAGAGCGTGCAGATAATA
TTGATGAGGTGACTGCTCTACCTTAGACTACGAATATGTGATAGACTTTC
TATTTTGATTGAGAGGATTTATGTCTTTGCTTGGCTCTATTTTTGACCCC
TTTTATGGATTGGGGGGTCTGACGATGAGTTGAAAGCTGTAACATTTGGA
CGCTGACTGCTCTTGTTTCTTCCGCTACCAATGCGAGATCTATCTATATT
CTCTTCTTTAGAGCGGCTGCGCCTGCAGTGAATGCGTGATGGAGAGCATG
CATACTGGCACGGACAGTTACGGCGTTACCACTGGGTTTGGTGTCTCTTC
TCGTCGCAGAGAAGAGATCCGTAGTGCTCTTCATAAAGAGCTTATTAGAC
TTTTGAACGCTGGAACCTTTGGAAACGGAATATAGTCGTCTCACACGCTA
CTTCACTCAGCACCGATGGCTGCCGTGCTTGTGAGGGTTATCACTCTTCT
CCAGGGCTAATCCGGCATCCGATTTGAAATCCTGTACCCGATCCCATGAT
GCTCAATCACCAACTGCCCTCCATGTCTCCCTCTTCTCGGTACAATCGCT
GCTTCTTGGTTATCGGGACGCGCTTTCTTCTTTGCCCGGACGCTCAACGG
GACGGACCCCTTCTCAGGCCTCCCCGGTCTCATGAAAAGAATCTTTGGGG
TCCATTAGACCTTTCAACCCGTCGGGATTTCAGGTTTTTCGGAGGGGGGG
GTCCTCAGGGGGGGGCCTGCCCCTTGGCAATAGAAAAGGCATTTGAATTT
ATTGGTCCTTTCTCTCCTTCTGCTTCTGTTCTCAGGGCCTCACCCTTTGT
CCATCTGATATCTAAAAAATTTTCCCAGCTCTTTGTTCTGCGGGAGGCCT
AGCTGAACGGCATCCTCTATTTCTCCCTCCTCTCCCTTCGCCCCCCCTCT
TCTCACTGGCCCCGTCTTTTCGGCCCCGCTTTTATGGGGCCGGCTGCCGC
GATACGCGGTCAACCATTCCCCCCCCGCCTTTTCCCTCCTTTTTATTCCT
CTTCCCCTCCTTGCTTTCAAGAAACTTTTCTTTGTCCTTTTATTCGCTGT
ACACACCAACTTCTCTCTTCTTCCCTCCCCACACACAACGCTCCGCGGCG
CCCCCGCTCTCCCGCCTCGCCCCCTCCCCCCCTCAAACAAACATGTTATC
CTCACCA
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