DY258683

Overview
NameDY258683
Unique NameDY258683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258683_ssr450 microsatellite DY258683_ssr450:450..465. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258683_ssr301 microsatellite DY258683_ssr301:301..312. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258683_ssr655 microsatellite DY258683_ssr655:655..672. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1201 contig Ccv1_Contig1201:1..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: REV_ARATH (Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 5.064e-33
Identity = 77/118 (65.25%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:  676 RESSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKENDSACQKGWPQFGVLKNG 1029
            RE SS S+N+H   +GKYVRYTAEQVEALERVY+ECPKPSSLRRQQLIREC IL+NIEPKQIKVWFQNRR ++ QRK+ASR Q+VN +++   +N L  E +   QK   Q  V +NG
Sbjct:    9 RERSSDSMNRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECSILANIEPKQIKVWFQNRRCRDKQRKEASRLQSVNRKLSA--MNKLLMEENDRLQKQVSQL-VCENG 123
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.614e-33
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:  691 GSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            GS N H +DNGKYVRYT EQVEALER+Y++CPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR Q VN ++       L +END
Sbjct:    4 GSNNSHNMDNGKYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMN-KLLMEEND 99
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.638e-33
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:  682 SSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            SSS +    Q+D GKYVRYT EQVEALERVY+ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR QTVN ++N      L +END
Sbjct:   15 SSSPTAAAPQVDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMN-KLLMEEND 113
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSI (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.638e-33
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:  682 SSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            SSS +    Q+D GKYVRYT EQVEALERVY+ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR QTVN ++N      L +END
Sbjct:   15 SSSPTAAAPQVDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMN-KLLMEEND 113
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.513e-32
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:  682 SSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            SS G     Q+D GKYVRYT EQVEALERVY ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR QTVN ++       L +END
Sbjct:   18 SSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMN-KLLMEEND 116
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.513e-32
Identity = 73/100 (73.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:  682 SSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            SS G     Q+D GKYVRYT EQVEALERVY ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR QTVN ++       L +END
Sbjct:   18 SSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMN-KLLMEEND 116
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.599e-32
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:  712 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKEND 981
            LD+GKYVRYT EQVEALERVY+ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+A+R QTVN ++N      L +END
Sbjct:   21 LDSGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAARLQTVNRKLNAMN-KLLMEEND 109
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.127e-31
Identity = 76/125 (60.80%), Postives = 88/125 (70.40%), Query Frame = 1 
Query:  712 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKENDSACQKGWPQFGVLKNGL*ENHKFG*SPPAEYRDCK 1086
            LDNGKYVRYT EQVEALER+Y +CPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRR +E QRK+ASR Q VN ++    +N L  E +   QK   Q  V +N     H    S PA+   C+
Sbjct:   13 LDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTA--MNKLLMEENDRLQKQVSQL-VHENSYFRQHTPNPSLPAKDTSCE 134
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSJ (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica GN=HOX9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.072e-30
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:  640 MAMVIXXXXXXXRESSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKENDSACQK 996
            MA  +        +   G  +K  +D+GKYVRYT EQVEALERVY+ECPKPSS RRQQL+R+CPIL+NIEPKQIKVWFQNRR ++ QRK+ASR Q VN ++    +N L  E +   QK
Sbjct:    1 MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTA--MNKLLMEENERLQK 117
[Close]
BLAST of DY258683 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.072e-30
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:  640 MAMVIXXXXXXXRESSSGSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRGQENQRKKASRPQTVN*EINTYEINWLRKENDSACQK 996
            MA  +        +   G  +K  +D+GKYVRYT EQVEALERVY+ECPKPSS RRQQL+R+CPIL+NIEPKQIKVWFQNRR ++ QRK+ASR Q VN ++    +N L  E +   QK
Sbjct:    1 MAAAVAMRSGSGSDGGGGGYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTA--MNKLLMEENERLQK 117
The following BLAST results are available for this feature:
BLAST of DY258683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
REV_ARATH5.064e-3365.25Homeobox-leucine zipper protein REVOLUTA OS=Arabid... [more]
ATHB8_ARATH6.614e-3372.16Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
HOX33_ORYSJ8.638e-3374.00Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX33_ORYSI8.638e-3374.00Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX32_ORYSJ2.513e-3273.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI2.513e-3273.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
ATB14_ARATH5.599e-3277.78Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]
ATB15_ARATH2.127e-3160.80Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
HOX9_ORYSJ3.072e-3057.14Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX9_ORYSI3.072e-3057.14Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258683 ID=DY258683; Name=DY258683; organism=Citrus clementina; type=EST; length=1269bp
GTTTTTTCATTTTCATTTTCTTTTACGATTCATTAATCAGCTTCTTTGCT
GTAATGTCACAGCCCAGTACTGCTCTCTTTCTTGTGAGAGAGCTTCAAGA
TCAAAATGGGTTCTGTGATTTTGAGCTCCTTCAGCTGAAAATCTAGGATT
TTTTTCTTTGTTCTTTCTTAAAGGGTTTGGTCTAATTGGAAGCAATAAAA
TTGGCAGGGAAAAAGAAAAAAAAAAACGAGTTCTTTAGTGTTCAGAGCTT
GATCAGCAACCAATAACCGCAAGGGTTTCATTAAAATACAGACTTTTTGT
TTGTTGTTGTTGATTATAAGCTCTCTTCAAGAACCCATCATCATTCATTT
GGCTTATTTGGCTTTGAGAGTCTTTACACTTAAGACCAAAGAATCTTCTT
TTAAGCATCACCAGTTTTGTAACTCTCTGTCTCTCTGTCTCTGTCTCTGT
CTCTCTCTCTCTCTCTTAACACATCACAAACGACGGACTTTACTAAGAAG
ACAAGGATATTTAAGCTCCCTAATCCCAAAACAAGCAGCACCTAGTTTGC
TTTTTTTCAAGACTCAATTTTAGCACACAGACAGACCCATCTGGTTAAAT
CTCTTGTGGGCTTGTCGTTGGATTTGCCAAAAAAAAGTAATGGCTATGGT
GATTCAGCAGCAGCAGCAGCAGCAAAGAGAGAGCAGTAGTGGGAGTATCA
ACAAGCACCAGCTTGATAATGGGAAGTATGTTCGTTACACGGCGGAGCAA
GTGGAAGCTCTCGAGAGAGTCTATTCTGAGTGCCCCAAGCCCAGTTCTTT
GCGTAGGCAACAGCTGATCCGTGAGTGCCCCATTCTTTCCAACATAGAGC
CTAAACAAATCAAAGTTTGGTTTCAAAATCGAAGGGGTCAAGAGAACCAG
AGGAAAAAGGCTTCAAGACCCCAAACGGTGAATTAGGAAATAAACACCTA
TGAAATAAACTGGTTGAGGAAGGAAAATGATTCGGCTTGCCAAAAAGGGT
GGCCCCAGTTTGGTGTTTTGAAAAATGGGTTATAAGAAAACCACAAATTT
GGGTAAAGCCCCCCGGCCGAATACCGGGATTGCAAACTTTGTGACCTTTT
GGGGGGGGCCCCACCCCCCTCAGCCAATTCTCTTGGAAAAAAAGAGCCCA
TTTACACCCTGGGCGGGGACACCTCTCTTTTTTCTTTGTTTGGAGGAAAA
AGAAAAAACCCTTTGGGCGCAAAAGAAATTTTTCTTCTTTTTCCAAAAAA
GAGAGATCAGCAACGAGGG
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