DY258684

Overview
NameDY258684
Unique NameDY258684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1094
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.419e-49
Identity = 92/184 (50.00%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  340 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNP 891
            +PC+ ++D  G + K       SKE  +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+ GEEAI+IGSAAAL   D I  QYRE GV +WRG+T+    NQ   N+ D GKGRQMP+H+GS+K+N  TISSP+ TQLPQAVG +Y+ K+  +  C + Y G+G  S G F   +   ++   P
Sbjct:   64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTP 247          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.590e-47
Identity = 94/228 (41.23%), Postives = 135/228 (59.21%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 277          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 8.606e-47
Identity = 95/228 (41.67%), Postives = 135/228 (59.21%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 281          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 8.606e-47
Identity = 95/228 (41.67%), Postives = 135/228 (59.21%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 281          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 8.606e-47
Identity = 95/228 (41.67%), Postives = 135/228 (59.21%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 281          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.504e-46
Identity = 93/228 (40.79%), Postives = 134/228 (58.77%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QR+GR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F +Q + N  D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 278          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 7.286e-46
Identity = 93/228 (40.79%), Postives = 134/228 (58.77%), Query Frame = 1
Query:  274 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGG------RFSCRIE-----LCSSYGNPCRLHLSQQWLG 924
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG ++ +++TISSP+ATQ+PQAVG AY+ K    +   + Y G+G  S G       F+  +E      C + G       S+Q+ G
Sbjct:   64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 291          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.165e-29
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  403 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKG-RQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRF 852
            ++ + AV MY  M+  + +D  ++   R G+  F ++  G+EA  +G+A AL  + D++LP YR+ GV+L  G T +      FA  AD   G RQMP H+G KK   +T SSP+ TQ+P AVG+A + +MEKKD  A    G+G ++ G F
Sbjct:   11 LTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGIALAGRMEKKDIAAFVTFGEGSSNQGDF 162          

HSP 2 Score: 40.817 bits (94), Expect = 2.165e-29
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWA 925
            +GDFH   NFAAV + PV+F+C NN +A
Sbjct:  159 QGDFHEGANFAAVHKLPVIFMCENNKYA 186          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.437e-25
Identity = 71/200 (35.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:  322 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRFSCRIELCSSYGNPCRLH-LSQQW 918
            E+S+      RVLDD+G  + G    Q+S E  ++    M+  ++ D+ +  AQRQ + SFY+  +GEEAI      AL   D   P YR+ G+L+ R Y L     Q+ +N+AD  KGRQ+PI Y SK+  + +IS  +ATQ  QAVG   +  ++     A A+ GDG T+   F   +     Y  P  L+ ++ QW
Sbjct:   46 ETSDLAYSLVRVLDDDGHAV-GPWNPQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKLSFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKGRQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQW 244          
BLAST of DY258684 vs. ExPASy Swiss-Prot
Match: ODPA_BACCE (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus cereus GN=pdhA PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.733e-25
Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  352 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSGGRF 852
            ++L++ GE++  +   ++S +   ++   MV  +V+D       RQGR  FY  T G+EA  + S  AL A+DFILP YR+   L+W G  L     Q F        G QMP     + +N +     I  Q+ Q  GVA  +K+  K + A+ YTGDGG S G F
Sbjct:   27 QILNEKGEVVNEAAMPELSDDQLKELMRRMVYTRVLDQRSISLNRQGRLGFYAPTAGQEASQLASHFALEAEDFILPGYRDVPQLVWHGLPLY----QAFLFSRGHFMGNQMP-----ENVNALAPQIIIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQGDF 184          

HSP 2 Score: 36.965 bits (84), Expect = 3.733e-25
Identity = 13/35 (37.14%), Postives = 23/35 (65.71%), Query Frame = 2
Query:  842 EGDFHAALNFAAVMETPVVFICRNNGWAHNTNISK 946
            +GDF+  +NFA   + P +F+ +NN +A +T + K
Sbjct:  181 QGDFYEGMNFAGAFKAPAIFVVQNNRYAISTPVEK 215          
The following BLAST results are available for this feature:
BLAST of DY258684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ODBA_DICDI1.419e-4950.002-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT6.590e-4741.232-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR8.606e-4741.672-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA8.606e-4741.672-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN8.606e-4741.672-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE2.504e-4640.792-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN7.286e-4640.792-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BACSU2.165e-2939.472-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODBA_PSEAE2.437e-2535.502-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODPA_BACCE3.733e-2534.73Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258684 ID=DY258684; Name=DY258684; organism=Citrus clementina; type=EST; length=1094bp
GTTGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAG
AGCCATGGCCCAATGCTTACGGCAAAGAGTCGGTTTGCTGAGGATATTAA
GTGGCCAGAGTTGTTCATCCCCATCAACCATATTCCCACTTCAGCAATAT
AATTCACCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGA
GTCCACCGTTGCTGCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCG
ATGATGATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACT
TCTGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTT
TCGAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAAC
AGGTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTG
CAGGTAATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTC
TTTCTACCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAG
CTGCACTCAGCGCCGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGA
GTACTCTTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTT
TGCAAACAAGGCTGATGATGGGAAAGGCAGACAGATGCCAATTCATTATG
GGTCTAAAAAGCTTAACTACATCACCATATCGTCACCTATCGCTACACAA
CTTCCTCAAGCTGTTGGTGTGGCTTATTCTCTTAAAATGGAGAAAAAGGA
TGCCTGTGCAGTTGCTTATACTGGAGATGGCGGCACCAGTGGAGGGAGAT
TTTCATGCCGCATTGAACTTTGCAGCAGTTATGGAAACCCCTGTCGTCTT
CATCTGTCGCAACAATGGCTGGGCCCATAATACCAATATATCAAAAACAT
TTCCAAACGAAGGGTATTGGTTGTTAGGGGGCCGGGCATAAGGGATCCCA
AACCATAACAATTAAAAGGGAATGGAGGCCACTTTGCTGTTTTAAACCCC
CCAGTTTTCCGGCCGGCCTCCGGGGAAATGGGCGATTTCAAGTG
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