DY258692

Overview
NameDY258692
Unique NameDY258692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1217
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258692_ssr318 microsatellite DY258692_ssr318:318..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1204 contig Ccv1_Contig1204:1..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258692 vs. ExPASy Swiss-Prot
Match: BLH1_ARATH (BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.960e-20
Identity = 90/265 (33.96%), Postives = 110/265 (41.51%), Query Frame = 3 
Query:  228 MATYFHGNPAEFQAPD--GLQTLVLMNPTTYVXXXXXXXXXFSDTNHXXXXXXXHN--------SLIFLNXXXXXXXXXXXXXXTQHFVGIPTTAHQD------DSISPLHGLLPRV----HXXXXXXXXXXXXARDTPRAKQGXXXXXXXHQ-------------HPAFGSQGGQTVSGEDIRXXXXXXXXXXXXXXXXXXMQSVLLSSKYFEAAQELLDEVVNVNNSWITNKSE-FSKKVXXXXXXXXHKVIGKSSAGARNNG 920
            MA YFHGNP E  A    GLQTL+LMNPTTYV          ++ N         N        S +FL+              +Q FVGIP + H+       D+IS LHG  PRV    +            A +TPRA+QG        Q             H  FGS       GEDIR                      L+SSKY +AAQELLDEVVN ++  +  KS+ FS K          K +G+SSAGA   G
Sbjct:    1 MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLDSHAPQPNA------SQQFVGIPLSGHEAASITAADNISVLHGYPPRVQYSLYGSHQVDPTHQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHVGFGSG-----HGEDIRVGSGSTGSGVTNGIAN------LVSSKYLKAAQELLDEVVNADSDDMNAKSQLFSSK---KGSCGNDKPVGESSAGAGGEG 245

HSP 2 Score: 25.409 bits (54), Expect = 6.960e-20
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2 
Query:  941 PRNLTPRKRQKFQMKKAKLINI 1006
            P  L   +RQ+ QMKKAKL N+
Sbjct:  257 PVELGTAERQEIQMKKAKLSNM 278
The following BLAST results are available for this feature:
BLAST of DY258692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BLH1_ARATH6.960e-2033.96BEL1-like homeodomain protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258692 ID=DY258692; Name=DY258692; organism=Citrus clementina; type=EST; length=1217bp
GTTTCACTCCCTTTCCTTTTCCTCTTCACCATCATCTTCTAGCCACATAG
AAGATGAATAAATATGAATAAATTATCCATCATCTGTCAATTTCCTTTCA
GGTTTTGCTTGATAAGATCGATCCATCGATGGGCTGATTGCTCAAATTAA
GACTCAAATCAGGCAATTATAAGTTCGTTTCGGTTTCGTTTTTCAAGAAC
TCAAGATCAAAATAATAAGGTAACAGGATGGCAACGTACTTTCATGGGAA
CCCAGCTGAGTTTCAAGCCCCAGATGGGCTTCAAACCCTCGTACTTATGA
ACCCTACAACTTACGTTCAACAACAACAACAGCAACACCAACAATTCTCC
GACACAAATCATCCTCCGGCGCCGGCGCCGGCTCACAACAGCCTCATTTT
CCTCAACTCCTCTGCCATCTCCCCTCACGCGCCGCCGCCACCTTCCCACA
CTCAACACTTCGTCGGCATCCCCACCACCGCTCATCAGGATGACTCCATC
TCCCCTCTGCATGGACTCCTGCCGCGCGTCCACTACAACCTGTACAACCC
CAATTACCCTAGTCCACCAGCGCGTGACACCCCACGCGCCAAGCAGGGAC
TGTCTTTGAGCCTCTCTTCCCACCAACACCCCGCCTTCGGCTCCCAGGGT
GGTCAAACGGTTTCCGGAGAGGATATTAGGGTTTCTGGCGGGTCTGCATC
GTCGGGTTCGGGTGTCACTAATGGGGTTTCCGGGATGCAAAGTGTGTTGT
TGAGCTCTAAGTACTTTGAAGCTGCTCAAGAGCTGCTTGATGAAGTTGTT
AATGTGAACAATAGTTGGATTACCAACAAGAGTGAATTTTCCAAGAAGGT
TAATGGTAATAACAATAACAATAATCATAAGGTGATCGGAAAGTCTTCGG
CGGGCGCCCGAAACAATGGTCCATCCCCCCGGAAAACTTGCCCCGGAACT
TAACCCCGCGGAAAAGGCAGAAATTCCAAATGAAAAAAGCTAAGCTTATT
AATATTGCTTGATGAGGGGGAACGAAAGGGTACCGGGCCGAACCCCCCCC
CCCAAAGGCAAAAAATGGGATTTTTTTCTCTTTGTTAACAAAGCACCCCG
GGAAATTTGTAGTTCCCCCAAAAAAAAACATAAACACCCCCCCCTTTTTT
TCCTTCCCCAAAAAAAAAAAATTTTTTCCCAAAAAACAAAATTTTTTTCC
CCGGGGGGGTGGGTTTT
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