DY258699

Overview
NameDY258699
Unique NameDY258699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1089
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258699_ssr134 microsatellite DY258699_ssr134:134..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY258699 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.381e-12
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 KVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV 123
            KVGVAGVMSHISTGGGASLELLEGK LPGV+ALDEA PV V
Sbjct:  438 KVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 478
[Close]
BLAST of DY258699 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.443e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 KVGVAGVMSHISTGGGASLELLEGKELPGVVALDEA-TPVAV 123
            KVGVA VMSHISTGGGASLELLEGK LPGV+ALDEA  PVAV
Sbjct:  440 KVGVASVMSHISTGGGASLELLEGKVLPGVIALDEADAPVAV 481
[Close]
BLAST of DY258699 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.898e-11
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 KVGVAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV 123
            KVGVA  MSHISTGGGASLELLEGK+LPGV+AL+EA PV V
Sbjct:  393 KVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEADPVPV 433
The following BLAST results are available for this feature:
BLAST of DY258699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PGKH_ARATH1.381e-1290.24Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_TOBAC4.443e-1188.10Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL9.898e-1182.93Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AD07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258699 ID=DY258699; Name=DY258699; organism=Citrus clementina; type=EST; length=1089bp
AAAGTTGGAGTTGCCGGTGTCATGAGCCACATATCAACTGGTGGTGGTGC
CAGTTTGGAGTTGTTGGAAGGCAAAGAGCTTCCAGGTGTCGTTGCTCTTG
ATGAAGCTACACCAGTTGCCGTGTAAGATCAAAATTATTATTATTATTAT
TATTCTTTTTGGCCCACTTTTCAATGTGATTTATGTTTGTAAACGAGAAA
TGAAAACCTTGTAAGAAGATATGAGTTCATCTTGTAAATTTTCACCTTTG
TGATCAATGTATGGTCCCATTCTTGCTGAAATTGCTACCAATCACTGTAT
GGATAGGGCAAGCAGAGCCACCCAATCTTTTTCAAATAAATTGGCTCTTT
TCCTCATTAAAAAAAAGAACACAGAAAAAAAAAAAAAAAAAAGAACTACC
TTCCGATAACTAGCTGAAAAAAAAAACGAAAAAAGCTGGACAAAAAGCTG
AAAAAACAAAGGTGGCACCCTCCCTTTGCTAACACGGCTGCTATTTTTGA
AAAACCAATTTTTTGATTTTTTTTCTGAAAAAGATGGTAACTATGAATCA
AATAATTCATATTTTGACCCCGCTGATGGACCCCATTCTGATGCGATTTC
TGGTGAGGATGATTCTGACCATGACGATTAGGATGATTCTTAAAATGATG
ATGATTTATATTAAGAAGAAGATAAAACTAACACTCCTGAAATAAACCAC
ACCACACCCACAGAAACTGCCACAATATCTTCCGCTCCAGGAAAGAAGGC
AATTTTTCCAAAGACCGATGGTATGAAAGGAGAAAAAGTCCCCCCCCCCC
TCCTTCCAAAGGGGGAAAAAAACCCGATGCGACGGCCCTACCCCCCACAC
CCCAAGGAAAAAAACAAATTTTTTCCCCCCCCCAAAAAATTAAGATGTCA
AAAAGAAAAAACCCCCCCTGAAGAAAGGCCCGACCCTTCGTGGAAAAGGG
GAAAGAGTTTATTTTTTTTTTTTTTTCTACGTTTTTTCGGAATGGGGCGG
GCACTGTTTTTTTCTTGTCAAAAAAAACACAATGCGACAACCAAACCAAA
AAATTTTTTTTTTTTTTGTTTGTGGTTTTCCTGCGCGCG
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