DY258702

Overview
NameDY258702
Unique NameDY258702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9979 contig Ccv1_Contig9979:578..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258702 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.803e-87
Identity = 157/166 (94.58%), Postives = 162/166 (97.59%), Query Frame = 2
Query:    2 KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 499
            KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNL+GIWNFTNPGVVSHNEILEMY+ YINPEFKW NFTL+EQAKVIVAPRSNNEMDASKLKKEFPELLSIK+SLIKY + PNKKT
Sbjct:  504 KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669          
BLAST of DY258702 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.353e-84
Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = 2
Query:    2 KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 499
            KEED PNFTGSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMT+LDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P+FKW NF L+EQAKVIVAPRSNNEMD +KL KEFPE+LSIKDSLIKYVFEPNK+T
Sbjct:  499 KEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664          
BLAST of DY258702 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 8.206e-82
Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 2
Query:    2 KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 499
            KEED PNF GSFYSKTKAMVEELL+E+DNVCTLRVRMPISSDLNNPRNFITKISRYNKVV+IPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P FKW NFT++EQAKVIVA RSNNEMD SKL KEFPE+LSIK+SL+KYVFEPNK+T
Sbjct:  502 KEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667          
BLAST of DY258702 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.854e-33
Identity = 71/165 (43.03%), Postives = 107/165 (64.85%), Query Frame = 2
Query:    5 EEDTPNFTGSFYSKTKAMVEELLKEYDN-VCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPE----LLSIKDSLIKYVFE 484
            E D PNF GS YS  K   + L+  +DN V  LR+RMPI+ +  NPR+FITKI  Y+++ +IPNSMT+LD+++P+ I+MA+    G +NFTNPG+VSHNEIL + +    P   W N + ++Q  ++ A RSNN ++  KL+  +P+    L  I++ + K  F+
Sbjct:  125 ENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTWENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288          
The following BLAST results are available for this feature:
BLAST of DY258702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH3.803e-8794.58Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH1.353e-8490.96Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH8.206e-8289.16Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV1.854e-3343.03Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AD11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258702 ID=DY258702; Name=DY258702; organism=Citrus clementina; type=EST; length=909bp
TAAAGAGGAAGATACACCCAATTTTACTGGTTCTTTCTACTCAAAAACCA
AGGCCATGGTTGAAGAGCTGTTGAAAGAATACGACAATGTTTGCACTCTC
AGAGTCCGAATGCCGATATCTTCTGACCTAAACAACCCCCGCAACTTCAT
TACCAAGATTTCTCGTTATAACAAGGTGGTCAACATTCCAAACAGTATGA
CTGTTTTGGATGAACTTCTCCCCATTTCAATTGAGATGGCAAAGCGTAAC
TTGAGGGGTATTTGGAACTTCACAAACCCTGGGGTTGTGAGCCACAATGA
AATTCTTGAGATGTACAAGAAGTACATTAACCCAGAATTCAAGTGGGTGA
ACTTCACATTAGATGAGCAAGCAAAGGTGATAGTCGCCCCAAGAAGCAAC
AACGAGATGGATGCTTCTAAGTTGAAGAAGGAGTTCCCTGAGTTGCTATC
CATCAAGGATTCACTGATCAAGTATGTCTTTGAGCCCAACAAGAAAACCT
AGGGTACATTAAGCAGCTTTCAGTTGTAGGGGCCTCTTGTTTGACCAACA
CATTCTGCATTACATAATAGGTTTGGAGTACCATTGTACTGTTAATCAGC
TTCACTCCTCATTTCTTTTTGGTGTAATCACTTTATATTTACTGCACTAG
AGATAATTAGCCATGCTTCTTTCATTATTTTTCTTGGAGTTTTATTGAGA
TATGGTTAGTGTATTTTTTCTAGAATAGGTTGCTAATATTTAATGGCATC
TGCTAGTTGCTAGTATGTAACTTTTGCAGTATCTGTTAAATGAATATGGC
CGCATGCTGTTCGATGTATTTTCTTTTGATTACTTAGCTTAAGCTGTTGT
CTTTTTTGCATGAAGAGTTGTAAGTGAAATGATGAATGAAATTTTGCGAA
TCCTTCATT
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