DY258707

Overview
NameDY258707
Unique NameDY258707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1211 contig Ccv1_Contig1211:1..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.780e-26
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  186 SKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 407
            +K  +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKLS
Sbjct:   44 AKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.255e-17
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  192 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 407
            TP+HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++ SYKL+
Sbjct:   52 TPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 6.864e-17
Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 3
Query:  192 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 407
            +P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++ SYKLS
Sbjct:   47 SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.406e-16
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 3
Query:  183 QSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 404
            +S TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++ SYKL
Sbjct:   50 RSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.441e-14
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  192 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 404
            T SHP +F+MI++A+  L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++ S+KL
Sbjct:   48 TSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.188e-14
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  198 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 407
            SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++ S+KLS
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.699e-13
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  192 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 404
            T SHP Y +MI +A++ L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++AS+K+
Sbjct:   59 TSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.699e-13
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  198 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 404
            SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++AS+KL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of DY258707 vs. ExPASy Swiss-Prot
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 4.309e-11
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  195 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 407
            P+HPPY QM+T+A+++L+++ GSS  A+ K++E K+ KD     F K L++ LK F   G L+K++ SYKLS
Sbjct:   23 PTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKLS 94          
The following BLAST results are available for this feature:
BLAST of DY258707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
H1_SOLPN2.780e-2677.03Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_WHEAT5.255e-1755.56Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_MAIZE6.864e-1755.56Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_SOLLC3.406e-1652.70Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES2.441e-1450.70Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA3.188e-1455.71Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H12_ARATH2.699e-1350.70Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H11_ARATH2.699e-1352.17Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_VOLCA4.309e-1145.83Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AE09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258707 ID=DY258707; Name=DY258707; organism=Citrus clementina; type=EST; length=1302bp
GCACAACCTGCCATATCAAAGTTGGCGGATTCTTTATTTGCGAAAGTATA
TGGCCACAGAAGGTGAAGCTTGTGACGGAACAGCAGCCGGCTGCGGAGGA
GCCGGAAAAGGTCGTCACTGAGAAGAAGGCCAAGGCTGCTAAGGACAAGA
AGCCCAAGGCTCCTAAAGAGAAGAAGCCAAAGCAGTCCAAAACCCCCTCT
CATCCTCCTTATTTTCAGATGATAACGGAGGCACTGATGGCGCTGCAAGA
TAAGAGCGGTTCAAGCCCATACGCAATAGCCAAGTACATGGAAGAGAAGC
ACAAGGATGAGCTCCCAGCGAATTTCAGGAAAATATTGGCAGTGCAGCTG
AAGCACTTCGCTGCGAAAGGAAATCTCATCAAGATCAGGGCCTCTTACAA
GCTCTCTGAAGCGGCAGCTGGCAAAACCAAAAAAGAGATCAAGACCAAGG
CCAAGGCCCCAAGGAAAACAAGGTCCGTAACTGCTGCAGCTAAAATCAAA
GCAGAGTCTGCCGCCGCCGCTCCTCCTCCGCCTAAGAAGGCAAAGAAATC
GGCTGCTGCCAAACCCAAAGCAGCCCAAATCCATCATGTCCTCTGCTGCT
AAGAAAGCCCAAAAAGCTACTGCTCAGTACTAATATGTATGATATAATAC
TAGTAAAGCACAAAACTAGTTTCCACTTCCTTGTCCGATAAGAAGTATCA
TGTACATGTCAACCCCCGGGAATGATCGTGTTTTGGCAAAATGAATGTAA
TGACCCTCCCCAACTTTGGGTTTGGGTAAAAAAAAAAAAAAAAAAAAAAA
ACCCCCCACTTTCCTGGTACAAGGTTCGGCATTATAAAGAAAGCCTTGGC
TTAACAATTATGTGCCCACCGAAACGTCCCCCAATCGTCCCAAATAAAAA
TCCTTATTTGGCGGCCCGGGCGAAACCCCCCCGAATAAGGGAAGCCCAAT
ACAATAGGTCCCAAACGGGACTCTCCGACCCCCCCTGCGCCCCGCGCTCC
CCCAACCTCCCCGAACAGCACACACGGGGCACGAGAGAAAAAAAAGAAAA
GCACAACCACGAATAAACAAAGAGCACCCTCGGCCCACCCCCACCAAGGC
AGAACCTCGGCTACACGTTGACACCACACCCCCGAGCGAACACCCCAAGC
CACCCCCCTACTTCTCTATCCCAACACAAGCCCTCCCCTCTCTCCCGCGC
CGCTCCAAGACCCCGACCCTCCCGCAAACCACCTCACCCCCACCGCACGC
GGCCGCCCCGCCGCTCATCGCCCCTTCTTAGTCGCCTCAGCCCCCTGGCG
CC
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