DY258712

Overview
NameDY258712
Unique NameDY258712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1212 contig Ccv1_Contig1212:1..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258712 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 5.255e-63
Identity = 118/167 (70.66%), Postives = 135/167 (80.84%), Query Frame = 1 
Query:   82 SETDNKITDDAFKNKRTIYWKGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIKNDYCGY 582
            S    KI D AFK  RTI W GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEI+ND  GY
Sbjct:    2 SGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of DY258712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH5.255e-6370.66ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AF05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258712 ID=DY258712; Name=DY258712; organism=Citrus clementina; type=EST; length=793bp
CTTACGTTTGTCCTTTGGAAGCTTCAATCAGCTTATCCTTTTTACATAGA
TTAGGGAAAGCTCAGTCAACAGATAGAATCGAGCGAAACTGACAACAAAA
TAACTGACGACGCATTCAAGAACAAAAGGACCATATATTGGAAAGGGATG
GCGAAAATGCTGGTCTCCGATGAGGCACGCAAGGAGTTCGCCACTCTCCG
TCGCGCTTTCGACGAAGTCAACTCCACTCTTCAAACCAAGTTCAGCCAGG
AACCTGAACCTATTGACTGGGAGTATTACAGAAAAGGAATTGGCTCTCGC
TTGGTGGACATGTACAAACAGGCTTATGAAAGCATAGAGGTCCCAAAGTA
TGTAGACAAAGTCACCCCTGAATACAAATCTAAGTTTGATGCTTTGCTGG
TGGAATTGAAAGAAGCAGAAGGGAAATCTCTTAAGGAGTCCGAGCGTTTG
GAGAAAGAAATAGCTGAGGTTCAAGAACTGAAGGAAAAGATCAGCACCAT
GACCGCTGAGGAATACTTTGAAAAGCATCCGGAGCTCAAAAAGAAGTTCG
ATGATGAAATCAAGAATGACTACTGCGGCTATTGATCCCACATTTGCTCA
ATTTAGCAGCTGCATTTCCTAGCTTGGCCAAGAATTTCCTGAAGTTGCCC
TGTTTTCCCAGCTTGTTAAAAATAATGATCATTCAAATTGTTTTTGCATC
AACCGGTTGCCCTGGTTTCAAAAAATTGAGCTTTGAACCCACCTATGCTA
AACATTCAGTTTTCGTGGCACTGCAAACTTTTAAACTTTTAAA
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