DY258728

Overview
NameDY258728
Unique NameDY258728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1007
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 363.229 bits (931), Expect = 1.330e-99
Identity = 184/245 (75.10%), Postives = 204/245 (83.27%), Query Frame = 1
Query:   40 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            YG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P   +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+ GE N+ +QL   MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFAC +NEELAANYLLDHMHEFED
Sbjct:  135 YGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 355.91 bits (912), Expect = 2.124e-97
Identity = 190/250 (76.00%), Postives = 208/250 (83.20%), Query Frame = 1
Query:   40 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            YG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG   GNL  Q+A  M  PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFAC +NEELAANYLLDHMHEFE+
Sbjct:  174 YGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 5.615e-82
Identity = 158/248 (63.71%), Postives = 190/248 (76.61%), Query Frame = 1
Query:   40 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G  E NL DQ    MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFAC ++E+LAANYLLDHM+EF+D
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 9.276e-77
Identity = 150/250 (60.00%), Postives = 190/250 (76.00%), Query Frame = 1
Query:   40 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A  +              S GPN++PLDLFPQ      +G+   G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G  GEG++ DQ    MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC +NEELAANYLL++  +FED
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 8.682e-75
Identity = 147/249 (59.04%), Postives = 185/249 (74.30%), Query Frame = 1
Query:   40 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFED 774
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                   S GPN++PLDLFPQ   +  S AAG   G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++   DQ    MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C +NEELAANYLL+H  +FED
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.495e-42
Identity = 98/244 (40.16%), Postives = 145/244 (59.43%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL 750
            A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P   QAA++              ++                  + ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC +NE LAAN+LL
Sbjct:  180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.330e-42
Identity = 98/244 (40.16%), Postives = 144/244 (59.02%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL 750
            A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    AA++                 P ++             + ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +   G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC +NE LAAN+LL
Sbjct:  180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.819e-41
Identity = 96/250 (38.40%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL 750
            A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC +NE LAAN+LL
Sbjct:  180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.682e-41
Identity = 96/251 (38.25%), Postives = 142/251 (56.57%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLL 750
            A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                 GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC +NE LAAN+LL
Sbjct:  180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of DY258728 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.827e-40
Identity = 99/250 (39.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query:   49 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACXQNEELAANYLLDHMHEFE 771
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                           Q      + AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC +NE LAAN+LL    + E
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
The following BLAST results are available for this feature:
BLAST of DY258728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23D_ARATH1.330e-9975.10Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.124e-9776.00Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ5.615e-8263.71Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH9.276e-7760.00Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH8.682e-7559.04Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN1.495e-4240.16UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN3.330e-4240.16UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT2.819e-4138.40UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE3.682e-4138.25UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE1.827e-4039.60UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AH07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258728 ID=DY258728; Name=DY258728; organism=Citrus clementina; type=EST; length=1007bp
TCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGC
TGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGA
TTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCT
CTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTC
TGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTA
ATGGACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCG
GCACCCGTTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCC
TCAGGGCCTTCCTGACGTGGGTTCAGGTGCAGCTGGCGCTGGCAGTCTTG
ACTTTTTACGTAATAGTCCACAGTTTCAAGTTTTGCGAGCTATGGTGCAG
GCAAATCCTCAATTATTGCAGCCCATGCTTCAAGAGTTGGGGAAACAAAA
TCCTCAGCTAGTGAGGCTTATTCAGGAACATCAGGCTGACTTCCTTCGGC
TTATCAATGAACCTGTTCAAGGTGGTGAGGGGAATTTGGGGGACCAGCTT
GCTGGGTTAATGCCACAGTCAATACAAGTCACGCCCGAAGAACGTGAAGC
CATAGAACGTCTTGAGGCAATGGGCTTTGATCGAGCAATTGTATTGGAGG
TGTTCTTTGCCTGCAANCAGAATGAGGAACTTGCTGCCAACTACCTTTTA
GACCATATGCATGAGTTTGAGGATTGATTGAAAGGGGAATAGAAAAGATT
CAAGATGAAAATGATGGTTACTACCTTTGGACGGCATTTATTAAAAAATA
CCTCTAATTAATTTCTTTCCCCTCTCATTTTCCCTCAACTTCATTTGTTA
AACAAAGTTCAAATATTCTTGCCTTGGGTATGGGTGGAAAATGGAACAAG
TAAGGCAAGATGTAACATTCCTTCACTTTCTCATTTTAGAAACCTAAGGG
TTCAGGG
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