DY258765

Overview
NameDY258765
Unique NameDY258765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1210..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.036e-34
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 244
            NF D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  356 NFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.434e-33
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 244
            NF DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  355 NFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.816e-27
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 238
            NF+ + +   L+V+EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  357 NFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 45/79 (56.96%), Postives = 60/79 (75.95%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 238
            +F D  T  E+E+ E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  356 HFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.938e-21
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    5 FRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD-DGEIYDDSE 244
            F+D  +  + E+ E+  ++EWFAN Y+ FG +LEFVTNKSQEGSQFC+GFGG+GG+LRYQ+D    ++F + D   YDDS+
Sbjct:  358 FKDKESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSD 438          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.686e-19
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 238
            +F D  +  E+E+ E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  357 HFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  D    D E +D
Sbjct:  356 HFIDKETGQEHELIESMPLLEWFANSYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMDYQGVDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of DY258765 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.814e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 2
Query:    2 NFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 235
            +F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  356 HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of DY258765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1Z_ARATH9.036e-3482.72Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH3.434e-3382.72Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.816e-2774.68Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI3.015e-2156.96Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI3.938e-2154.32Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME3.686e-1956.79Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA4.814e-1957.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB4.814e-1956.41Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258765 ID=DY258765; Name=DY258765; organism=Citrus clementina; type=EST; length=808bp
CAACTTTCGTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGT
CATCGCTGCTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACA
CTCGAGTTTGTTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGG
CTTTGGCGGTATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCAT
TTGATGAGTTTTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAA
TCAATCAAACCTACCCAATTGCTGGTGCAGGATGACGACGTGAAGGGCCT
GCACCAGCGCGCGATTCGTCGCGCCAACTTCGGAGTACCTATGTTCCAAA
ATGTTCCCAAGTTGCTGCTGAGGTACGATTATGTCATGTCTTAGCTGAGC
AAGCTATCTATGATTCTGTTATATGGGCTTTGTAATGGCGCTGCTGGATA
TGATCCAGAAGGGAGGAATTATGCAAAGCTACTAGCTCCAGAAGGGAGGA
ATTATGCAAAGCTACTAGCTAATGTTGGTTAGGACCTTACGAATACCTCG
CATTCAGATGATGGATATGGGGATCTCTCCCATGGCAAGCCCTAGGGGCT
TGTGGATTGAAACTGTTCTCTCAGACTTGGGTTTATCTTTTTATGGTTCT
ATTGTCTGTACAATGCATGTTAATCAGTGTGATGGATCTCCTGTTGTCTG
TCGGACTGGGTTATTTGTTTTAGGTTATGTTGTTTAAACATGCTTGTTAG
ATCTCCATCTTTGGTAGGCCATGGCTTGCTATAATAATAAAGTGATAACT
GTTTTGTT
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