DY258771

Overview
NameDY258771
Unique NameDY258771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10167 contig Ccv1_Contig10167:8..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.622e-29
Identity = 68/121 (56.20%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            VEK + +E+ R L+M+E L   +IG D   K  +RA +             ASFI SGP+GVG++E+AKALAAYYFGSEEAMIRLDM+EFM + TVS+L  SPPGYVGY +G QL +AVRR
Sbjct:  586 VEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR 706          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.799e-28
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V+K + +E+ R L+M++ L K +IG D   +  +RA +             ASFI SGP+GVG++E+AKALAAYYFGSEEAMIRLDM+EFM + TVS+L  SPPGYVGY +G QL +AVRR
Sbjct:  586 VDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR 706          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.145e-28
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            VEK + +E+ R L+M+E L   +IG D   K  +RA +             ASFI SGP+GVG++E+AK+LA YYFGSEEAMIRLDM+EFM + TVS+L  SPPGYVGY +G QL +AVRR
Sbjct:  589 VEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR 709          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.536e-26
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  400 VCVEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            + VEK + +E+   L+M+E L K +IG D   K  +RA +             ASFI  GP+GVG++E+AKALAAYYFG EEAMIRLDM+EFM + TVS+L  SPPGYVGY +  QL +AVRR
Sbjct:  532 ILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRR 654          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.897e-25
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K T+ E+ + L+M+E L   +IG D      ++A +             ASFI SGP+GVG+ E+ KALA+Y+FGSEEAM+RLDM+E+M + TVS+L  SPPGYVGY +G QL ++VRR
Sbjct:  489 VNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRR 609          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.878e-24
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K TK E+ + L M+E L   ++G +      ++A +             ASFI SGP+GVG+ E+ KA+A+Y+FGSEEAM+RLDM+E+M + TVS+L  SPPGYVGY +G QL +AVR+
Sbjct:  522 VSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRK 642          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.136e-24
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K TK E+ + ++M+E L   +IG D      +RA +             ASFI SGP+GVG+ E+ KALA+Y+FGSE +MIRLDM+E+M + TVS+L  SPPGYVGY +G  L +AVR+
Sbjct:  492 VTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRK 612          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.319e-24
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K TK E+ + + M+E L   +IG D      +RA +             ASFI SGP+GVG+ E+ KALA+Y+FGSE +MIRLDM+E+M + TVS+L  SPPGYVGY +G  L +AVR+
Sbjct:  492 VTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRK 612          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.295e-22
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L++D++L + +IG D      + A Q             ASFI  GP+GVG+ E+AKALAA+ F +EEAM+R+DM+E+M K +VS+L  +PPGYVGY +G QL +AVRR
Sbjct:  555 VSKLVESEMQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAAFLFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRR 675          
BLAST of DY258771 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.315e-21
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  406 VEKKTKEETHRFLEMDEILKKTLIGHD*PEKGTNRANQSVLXXXXXXXXXXASFIVSGPSGVGRAEVAKALAAYYFGSEEAMIRLDMTEFMGKRTVSQLSVSPPGYVGYPDGDQLKDAVRR 768
            V K  + E  + L ++E L K ++G D        A Q             ASFI  GP+GVG+ E+AKALAA+ F +EEA++R+DM+E+M K  VS+L  +PPGYVGY +G QL +A+RR
Sbjct:  553 VSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALAAFMFDTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRR 673          
The following BLAST results are available for this feature:
BLAST of DY258771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
CLPAB_SOLLC9.622e-2956.20ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA2.799e-2854.55ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC8.145e-2854.55ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.536e-2652.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH2.897e-2548.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.878e-2447.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU7.136e-2447.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE9.319e-2447.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PLEBO2.295e-2245.45Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB1_THEEB3.315e-2143.80Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258771 ID=DY258771; Name=DY258771; organism=Citrus clementina; type=EST; length=1245bp
AACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAA
GAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGGTCTTCTGC
TTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACGACGATCTT
GATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTACATGGGTTA
AGTGCAGCACTGCTTTTTTTTTTTTCTGTTTTGTTTAATTAAATAAATGA
TAGGTATACTATTACCTATCAATCATGACAATGTTTTAGTATGGGTTAGT
TCAAGCTTATAAAATTTCTTGAGACATACAGACAATCTTTTTGTTTACTT
TGGAGCTAATGATTTGCATGAACAAGGAAATAAATCAATAAGAGTTATTG
TGTGTGTCGAAAAAAAAACAAAAGAAGAAACTCATCGCTTCCTCGAGATG
GATGAGATTCTTAAAAAGACATTGATTGGTCATGACTAGCCTGAAAAAGG
TACTAATCGTGCAAACCAGAGTGTTCTTGTTCGACCCAAAAAACCCCCCC
GACCAGTTGCTAGTTTCATCGTTTCTGGTCCTTCTGGTGTCGGGAGGGCC
GAGGTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGGAGGCCAT
GATCAGGCTTGATATGACCGAGTTCATGGGGAAACGCACTGTTTCCCAGC
TCAGTGTTTCACCACCTGGTTATGTGGGATACCCTGACGGGGATCAGCTG
AAAGATGCTGTTCGCCGTCCCCTTAGAGGGGAGAACCCGGTGATGAATTT
GAAAAGCCACACCCCCAGTCTTAAAAAAGCCTGTTAATTTTCCCCCCGGA
GAGAAAAGTGTAACACGGGGAAAAATCCAACTTGGGGGCTCCCGGGACCC
GCTGAAAAAGGAAGAAAACCTTAGGTTTTTTTTCCCAAATTTGTCAAACG
GGGCCCCCCCCTTCCTGTTTTTCAACTAATACCTCCCCCCAACAACCCAC
CCCCTTTTTTTTCTCGGGGATTTCGCCCGGGAGGAAAAAACGAAAAATCG
GCAGTCGCTGTTTTTAAGAGGACCAAATTTTCAAAAAGGGGAAAAACGAA
AAGGGCCCCCCGCGGGGGGCGAAGACCCACCCCCCCCCCCCCCCCCCCCC
CCCCAAAATATTTTTTTTCTCCCCCGGGAAAAAAACCAGGAAAAAAATTT
CCTTTCCTCCTCATAAACACACCCCGCGGGGGGAAAGGGAGCGGG
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