DY258778

Overview
NameDY258778
Unique NameDY258778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1216
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:1..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.198e-49
Identity = 88/193 (45.60%), Postives = 129/193 (66.84%), Query Frame = 2
Query:  173 EKGPKDLLGLMIQAS--------SNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAILQ 727
            E G  DLLG++++++        +     ++  D+IEECK F+FAG++TT  LLTWTT+LL+ HP WQ  AREEVL+  G ++ P  + +  LK +SMIL E LRLYPP+I   +    D +LG Y IP GT++++P + +H +++IWG +A +FNP RF +GVA A K+ V ++PF  G R C+GQN A+LQ
Sbjct:  288 EPGEDDLLGVLLESNIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKHPEWQERAREEVLQAFG-KNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQ 479          

HSP 2 Score: 32.3426 bits (72), Expect = 3.198e-49
Identity = 14/37 (37.84%), Postives = 24/37 (64.86%), Query Frame = 3
Query:    6 VFIPGYRFLPTKRNISSWKLDKQIKRSLTKLIEREKR 116
            V+IPG+ +LPTKRN    +++K+I   L  +I +  +
Sbjct:  246 VYIPGWSYLPTKRNKRMKEINKEITDMLRFIINKRMK 282          

HSP 3 Score: 25.7942 bits (55), Expect = 3.198e-49
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  757 RFSFRLAPSYQHAP 798
            RF F +APSY HAP
Sbjct:  490 RFKFDVAPSYVHAP 503          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.767e-27
Identity = 72/192 (37.50%), Postives = 108/192 (56.25%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSN-----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            + ++K   D L LM+ A +NS        ++D +I  +   F FAG +TTS+ L++T   LA HP  Q   +EE+     ++  PT D V +++ L M+LNE+LRLYP      R  K DVEL G  IP+G+ ++IP  A+HHD   W  E  +F P RFS+   + +  P  ++PFG+G R C+G   A +
Sbjct:  262 DSKQKHRVDFLQLMMNAHNNSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHW-PEPEEFQPERFSK-ENKGSIDPYLYMPFGIGPRNCIGMRFAFM 451          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.014e-27
Identity = 65/191 (34.03%), Postives = 112/191 (58.64%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            ++ +K   D L LMI + ++  ++    ++D +++ +   F FAG +TTSN L++   +LA HP  Q   +EE+     ++  PT D +A+++ L M++NE+LR++P  +   R  K DVE+ G  IP+GT + +PI  +H D  +W  E  +F P RFS+   + + +P  ++PFG G R C+G   AI+
Sbjct:  262 KDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSVIFIFAGYETTSNTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVVNETLRMFPIAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLW-PEPEEFRPERFSK-KNKDSINPYVYLPFGTGPRNCIGMRFAIM 450          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.936e-27
Identity = 71/192 (36.98%), Postives = 109/192 (56.77%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSNIT-----DYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            + ++K   D L LM+ + +NS   ++     D +I  +   F FAG +TTS+ L++T   LA HP  Q   ++E+     ++  PT D V +++ L M+LNE+LRLYP      R  K DVEL G  IP+G+ ++IP  A+HHD   W SE  +F P RFS+   + +  P  ++PFG G R C+G   A++
Sbjct:  262 DSKQKHRVDFLQLMMNSHNNSKDKVSHKALSDMEITAQSIIFIFAGYETTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHW-SEPEEFQPERFSK-ENKGSIDPYVYLPFGNGPRNCLGMRFALM 451          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.714e-27
Identity = 67/191 (35.08%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            ++++K   D L LMI + ++   +    ++D +++ +   F FAG +TTS  L++    LA HP  Q   +EE+     ++ LPT D + +++ L M+LNE+LRLYP      R  K DVE+ G  IP+GT +++P   +H DQ++W  E  +F P RFS    + + +P  ++PFG G R C+G   AI+
Sbjct:  262 KDKQKHRVDFLQLMINSQNSKEMDTHKALSDLELVAQSIIFIFAGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVLNETLRLYPIAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLW-PEPEEFRPERFSR-KNKDSINPYTYLPFGTGPRNCIGMRFAIM 450          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.714e-27
Identity = 72/218 (33.03%), Postives = 119/218 (54.59%), Query Frame = 2
Query:   83 ITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            ++  V+R +K+  N K K  +              D L LMI + ++  +     ++D ++  +   F FAG +TTS++L++T   LA HP  Q   ++E+  V  ++  PT D V +++ L M++NE+LRL+P  I   R  K DVE+ G  IP+G+ ++IP  A+HHD   W +E  +F P RFS+   + +  P  + PFG G R C+G   A++
Sbjct:  249 LSKSVNRMKKSRLNDKQKHRL--------------DFLQLMIDSQNSKETESHKALSDLELAAQSIIFIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYW-TEPEEFRPERFSK--KKDSIDPYIYTPFGTGPRNCIGMRFALM 449          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.953e-26
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSNIT-----DYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            + + K   D L LM+ A +NS   ++     D +II +   F FAG +TTS+ L++    LA HP  Q   +EE+     S+  PT D V +++ L M+LNE+LRLYP      R  K D+EL G  IP+G+ + IP  A+HHD   W  +  +F+P RFS+   + +  P  ++PFG G R C+G   A++
Sbjct:  262 DSKHKHRVDFLQLMLNAHNNSKDEVSHKALSDVEIIAQSVIFIFAGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHW-PKPEEFHPERFSK-ENKGSIDPYVYLPFGNGPRNCIGMRFALM 451          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.423e-26
Identity = 68/187 (36.36%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  173 EKGPKDLLGLMIQASSNSSSN---ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            +K   D L LM+ +  NS  +   ++D +II +   F FAG  TTS+ L++   LLA HP  Q   +EE+     ++  P+ D V +++ L M+LNE+LRLYP      R  K DVE+ G  +P+G+ +++P+ A+H+D   W  E   F P RFS+   + +  P  F+PFG G R C+G   A++
Sbjct:  264 QKHRVDFLQLMMNSHDNSKDSHKALSDMEIIAQSIIFIFAGYDTTSSTLSFALYLLATHPDVQKKLQEEIDIALPNKARPSYDKVMEMEYLDMVLNETLRLYPIGSRLERVCKQDVEMDGVFVPKGSIVMVPVFALHYDPQYW-PEPEKFRPERFSK-ENKGSIDPYIFLPFGNGPRNCIGMRFALM 448          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.423e-26
Identity = 68/191 (35.60%), Postives = 109/191 (57.07%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASS----NSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            +E+EK   D L LMI + +     S   ++D +I+ +   F FAG +TTS+ L++   LLA+HP  Q   ++E+     ++   T D + +++ L M++NE+LRLYP      R  K DVE+ G  IP+GT ++IP  A+H D   W  E  +F P RFS+   + + +P  ++PFG G R C+G   A++
Sbjct:  262 KEKEKQRVDFLQLMINSQNYKTKESHKALSDVEIVAQSVIFIFAGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYW-PEPEEFRPERFSK-KNQDSINPYMYLPFGSGPRNCIGMRFALI 450          
BLAST of DY258778 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 9.695e-26
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  164 EEQEKGPKDLLGLMIQASSNSSSN-----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVGQNLAIL 724
            + ++K   D + LM++A + S        +++ +I  +   F FAG +TTS++L++T   LA HP  Q   +EE+     ++  PT D V  ++ L M+LNE+LRLYP      R  K DVE+ G  IP+G+ ++IP   +HHD   W  E  +F P RFS+   + +  P  ++PFG G R C+G   A++
Sbjct:  262 DSKQKHRVDFIYLMMEAYNKSKDKDSHKALSEIEITAQSIIFIFAGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHW-PEPEEFQPERFSK-ENKGSIDPYVYLPFGNGPRNCIGMRFALM 451          
The following BLAST results are available for this feature:
BLAST of DY258778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
C72A1_CATRO3.198e-4945.60Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP341_MOUSE1.767e-2737.50Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP3AO_SHEEP3.014e-2734.03Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3AB_MOUSE3.936e-2736.98Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3AC_CANFA6.714e-2735.08Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP3A5_HUMAN6.714e-2733.03Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP3A2_RAT1.953e-2636.98Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP3AV_MESAU7.423e-2636.36Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP3AD_MOUSE7.423e-2635.60Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3AG_MOUSE9.695e-2634.90Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258778 ID=DY258778; Name=DY258778; organism=Citrus clementina; type=EST; length=1216bp
GTAAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATA
AGCTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGAT
CGAGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGAC
GGCGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGC
TAATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGAC
ATAATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATC
CAATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGC
AGGTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTA
CCCACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAA
TGAATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCA
AGGCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTG
CTGATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGA
GGCAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAG
CGAAGCATCCAGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGC
GTTGGGCAAAATCTAGCCATCTTGCAAACAAGCTAGCCCTTGCCCATCTA
CTCCCACGCTTCTCATTTCGTTTGGCCCCCTCGTATCAACATGCCCCCAC
CGGCCCGGATGCTCCCATACCCACCATACGGTGCACCCATCATCCTTCAA
ATTTTGCAAAAAAAGTTAAGAATCCCCCCGTTGAATCCCAGCCCCTTCAT
CGATAATCCCCCCCCCCCCCCCCCCCCCCNTCNANGGAATAAAAATCCAC
TGACAGCGAGCAGTGCGCGTCTCTCGCGTTCCCAACAGCAAACCCGGGAC
CACAGCATCCTCTGAAACTCGAATAGAGCGCCGGAATATACCGAGGCCTC
TAATATGATCAGATCCCATTACCTCGGAAGCTGCAGACACGACCCATGAG
AATTTTGCGGTGCCCANCGTCCCGTTCCGTCTGTGCTGCCTGGCGATCGA
GAACACCTGCCCAACCGTCCTGCCCCTCGGCACTGCCCCTCCGCCCTCAG
CTCCTCCTTCATCGCC
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