DY258781

Overview
NameDY258781
Unique NameDY258781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1238
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.185e-41
Identity = 103/225 (45.78%), Postives = 138/225 (61.33%), Query Frame = 3
Query:  405 KTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNP-DALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQ-----HLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKNE*KLAFCSLYLVGNLPPPISFYLGWAGKMEEENKINTFYWGL-LW----GAVAPRV 1046
            KTDCKA + VKRR + G+WII  F+KDHNHE+ P  AY+FR  RN+ L   N  D LHA+ ERTK+M+V MSR+SGG+K +    GS++   VS+Q     +LALEEGD+QV+L++F  +  E P FFYAIDLNE QRL N  W DA+SR +  +  +VV F+T  +K   KL       V +   P+   LG A  +  +  + TF W +  W    G  AP+V
Sbjct:  122 KTDCKASMHVKRRPD-GKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKMYVEMSRQSGGYKNI----GSLLQTDVSSQVDKGRYLALEEGDSQVLLEYFKRIKKENPKFFYAIDLNEDQRLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPM--LLGCA--LVADESMETFVWLIKTWLRAMGGRAPKV 337          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.914e-27
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  405 KTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKNE*KLAFCSLYLVGNLPPPISFYLGWAGKMEEENKINTFYW 1013
            K  CKA + VKRR + G+W + SF+K+HNH++ P+QA+YFR HRN +L  SN   L     R K   +T  +    +  L    G + N     + L L+ GDA+++L+  M M +E P FF+A+D +E   L N  WVDA+   +  +  +VV FET    ++ K+       V +   P+    G    +  ++ + T+ W
Sbjct:   65 KIGCKASMHVKRRPD-GKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSNDSRLR----RKKNTPLTDCKHLSAYHDLDFIDGYMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNVFWVDAKGIEDYKSFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCG----LLADDTVYTYVW 258          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.740e-22
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  360 IPIKKTLGIINLSWSKTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLEC 845
            IP  +  G IN S SKTDCKA L VKRRQ+ GRW++RS +K+HNHEIF  QA                D+L               R+  G +KL    G++V  + S +   LE+GD + +L+ F  M  E P FFY+IDL+E+Q L N  WVDA++   C
Sbjct:   90 IPQARKRGRINRSSSKTDCKAFLHVKRRQD-GRWVVRSLVKEHNHEIFTGQA----------------DSL---------------RELSGRRKLEKLNGAIVKEVKSRK---LEDGDVERLLNFFTDMQVENPFFFYSIDLSEEQSLRNIFWVDAKAMHGC 216          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.740e-22
Identity = 55/168 (32.74%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  402 SKTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKNE*KL 905
            +KTDCKA + VKRR + G+W+I SF+++HNHE+ P QA                     + E+T++++  M+++   +K +   K    +     + L++E GD +++LD    M     NFFYA+DL + QR+ N  WVDA+SR    +  +VV  +T  ++N+ K+
Sbjct:  153 AKTDCKASMHVKRRPD-GKWVIHSFVREHNHELLPAQA---------------------VSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEKGRTLSVETGDFKILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKM 298          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.309e-21
Identity = 57/187 (30.48%), Postives = 100/187 (53.48%), Query Frame = 3
Query:  402 SKTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFP-DQAYYFRGHRNLD-LGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKNE*KLAFCSLYLVGNLPPPISF 956
            ++  CKA L VK  Q+ G+W++  F+KDHNHE+ P DQ +  R HR +     +  D L A     +R+   + ++ GG  K+   +    N++ + +  ++E G+ Q++LD+   M  + PNFFY++  +E Q + N  W D ++ ++ ++ G+ V F+T    N  +L F     V +   PI F
Sbjct:  146 TRVGCKASLSVKM-QDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILF 330          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.011e-19
Identity = 58/185 (31.35%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  357 GIPIKKTLGIINLSWSKTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSVVNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKNE*KLAF 911
            G   +K   I   S  KT CKA L +KR+++  +W+I +F+K+HNHEI PD  Y     +N   G                    ++ K G                     LALEE D +++L+HFM M D++P FFYA+D +  +R+ N  W+DA+++ +  +  +VVLF+T  ++N  ++ F
Sbjct:   90 GTKREKATAINPRSCPKTGCKAGLHMKRKEDE-KWVIYNFVKEHNHEICPDDFYVSVRGKNKPAG-------------------ALAIKKG-------------------LQLALEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPF 235          
BLAST of DY258781 vs. ExPASy Swiss-Prot
Match: FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.132e-12
Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  402 SKTDCKACLPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNS-----NPDALHAIRERTKRMFVTMSRKSGGHKKLHHQKGSV----VNHLVSAQHLALEEGDAQVMLDHFMHMADEKPNFFYAIDLNEQQRLNNALWVDAQSRLECSNLGEVVLFETK*LKN 893
            ++T C+A + + R   + RW +     DHNH   P +A+  + H+      S     NP+    ++ RT +++ T++  +          G      ++H  S++ L L  G  + + D F  +    PNF Y +DL +   L N  W+DA++R   S+ G+V+LF+T  L N
Sbjct:  132 TRTGCQAMIRL-RLIHFDRWKVDQVKLDHNHSFDPQRAHNSKSHKKSSSSASPATKTNPEPPPHVQVRTIKLYRTLALDTPPALGTSLSSGETSDLSLDHFQSSRRLELR-GGFRALQDFFFQIQLSSPNFLYLMDLADDGSLRNVFWIDARARAAYSHFGDVLLFDTTCLSN 302          
The following BLAST results are available for this feature:
BLAST of DY258781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FAR1_ARATH2.185e-4145.78Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS4_ARATH8.914e-2733.00Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
FRS1_ARATH1.740e-2240.74Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FHY3_ARATH1.740e-2232.74Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FRS5_ARATH7.309e-2130.48Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS2_ARATH4.011e-1931.35Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS8_ARATH2.132e-1227.17Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258781 ID=DY258781; Name=DY258781; organism=Citrus clementina; type=EST; length=1238bp
CTGGCCGAGACTTCTATTGATCACAACGAAAAGGCTGATAAGGCCACAGA
GACACATGAAATTGAGGACGGCCGTGGAGGTTATAACCGCGGTGGCCGTG
GAGGTTATAACGGCGGTGGCCGTGGTGGCTATGGAGGTGGTGGGGGCTAT
GGCGGTGGTGGGGGCTATGGCGGTGGTGGGGGCCATGGCGGTGGCCTCCG
CCGCTACGGGTGCTGGGCACCTGGATATCATGGAGGCTGCAAGCGCTACT
ATTAGGCTGGTGAAGTGGTGCATACTTAGCCTGAACTCGATACTGAAATC
TGAAACAACCTAGTACAGTAGAATCTGCATAACTCATCATTATGGATAGT
GTGACAGGCATTCCCATTAAGAAGACACTGGGTATAATTAATCTGTCTTG
GTCAAAAACTGATTGCAAGGCTTGCTTGCCTGTGAAGAGAAGGCAAGAAT
ATGGAAGATGGATTATTCGCAGTTTCATAAAGGATCATAACCATGAAATA
TTCCCAGACCAGGCATATTACTTTCGGGGTCATAGGAATTTAGATCTAGG
TAATAGTAATCCTGATGCCTTGCATGCAATCCGGGAGAGAACAAAAAGAA
TGTTCGTCACAATGTCTAGAAAATCTGGCGGGCATAAGAAACTACATCAT
CAGAAAGGAAGTGTTGTAAATCATTTAGTAAGTGCTCAACATTTAGCTTT
AGAGGAAGGAGATGCTCAAGTTATGCTTGATCATTTTATGCATATGGCAG
ATGAGAAACCTAACTTCTTTTATGCTATAGATCTGAATGAACAACAACGT
TTGAACAATGCCCTATGGGTTGATGCCCAAAGTAGACTTGAATGTAGCAA
TTTGGGTGAAGTTGTCCTTTTTGAAACCAAATAACTCAAAAATGAATAAA
AACTGGCCTTTTGCTCCCTTTATTTGGTGGGAAACCTCCCCCCCCCCATT
TCCTTTTACTTGGGGTGGGCCGGTAAAATGGAAGAAGAAAACAAAATCAA
CACCTTTTATTGGGGGCTTTTGTGGGGGGCTGTGGCTCCCAGGGTAAATG
GGGGGGGGAACATTTGCCCCCAAAGGTGGGTAAAAATCCCCCCCCCCCCC
CCCAAAAAAAAATTTTCCTCTTTTGAAAAAAAAAACCCAAATTCGGCGGG
AAAAAAATTTTTTTTTCCCCCCGCGAATATTTCCTCCCCCCCGCCTAATA
GGTGGGTTTTTTTTTGTGGTTATGTTGGTGGTGGGGGC
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