DY258792

Overview
NameDY258792
Unique NameDY258792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1081
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1241 contig Ccv1_Contig1241:1..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.096e-29
Identity = 81/209 (38.76%), Postives = 112/209 (53.59%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   TRQ G +   +   N     +  F IQFN+N+FGLA    LQV   L P  +    LP+    ++    P + LQVAVKNN   V+YF+    LHVLF EDG+M+R  FL TW+ +P+ NE    ++D P     N EA    L +S++F +AKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  733 KGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLNTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCP----LNTEAASSKLQSSNIFTVAKRTVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAPEVS 936          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP1B1_MOUSE (AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.951e-28
Identity = 80/209 (38.28%), Postives = 112/209 (53.59%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVP-QLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   TRQ G +   +   N     +  F IQFN+N+FGLA    LQV   L P  +    LP+    ++    P + LQVAVKNN   V+YF+    LHVLF EDG+M+R  FL TW+ + + NE    ++D P     N EA  + L +S++F +AKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  727 KGLEISGTFTRQAGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHVPLSPNQTVEISLPLNTVGSVLKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIANENEAQFQIRDCP----LNTEAASNKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAPEVS 930          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.739e-28
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEV---LKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPG---VKCANKTPNPEIA 789
            +GL+IS   TRQ G +   +   N     +  F IQFN+N+FGLA    LQV   L P  +    LP+    ++    P + LQVAVKNN   V+YF+    LH+LF EDG+M+R  FL TW+ +P+ NE    ++D P     N EA    L +S++F +AKR    QD+ Y S K+  G+  L EL    GNP    ++ + K   PE++
Sbjct:  730 KGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLSTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCP----LNAEAASSKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSCTDLELSLKCRAPEVS 936          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP2B1_RAT (AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.076e-25
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   T + G ++  M F N     +  F IQFNKN+FG+     L +   L P  S    LP+     +    P + LQVAVKNN   V+YF+  I L+VLF EDG+MER  FL TW+ +P+ NE+   +    + N +     L  ++++ IAKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVS 924          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP2B1_MOUSE (AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.076e-25
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   T + G ++  M F N     +  F IQFNKN+FG+     L +   L P  S    LP+     +    P + LQVAVKNN   V+YF+  I L+VLF EDG+MER  FL TW+ +P+ NE+   +    + N +     L  ++++ IAKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVS 924          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP2B1_HUMAN (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.076e-25
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   T + G ++  M F N     +  F IQFNKN+FG+     L +   L P  S    LP+     +    P + LQVAVKNN   V+YF+  I L+VLF EDG+MER  FL TW+ +P+ NE+   +    + N +     L  ++++ IAKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVS 924          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP2B1_BOVIN (AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.076e-25
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   T + G ++  M F N     +  F IQFNKN+FG+     L +   L P  S    LP+     +    P + LQVAVKNN   V+YF+  I L+VLF EDG+MER  FL TW+ +P+ NE+   +    + N +     L  ++++ IAKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  721 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVS 924          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.076e-25
Identity = 75/206 (36.41%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNEVLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIA 789
            +GL+IS   T + G ++  M F N     +  F IQFNKN+FG+     L +   L P  S    LP+     +    P + LQVAVKNN   V+YF+  I L+VLF EDG+MER  FL TW+ +P+ NE+   +    + N +     L  ++++ IAKR    QD+ Y S K+  G+  L EL    GNP    + K   PE++
Sbjct:  735 KGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHL-NADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVS 938          
BLAST of DY258792 vs. ExPASy Swiss-Prot
Match: AP1B_DICDI (AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.754e-19
Identity = 67/214 (31.31%), Postives = 111/214 (51.87%), Query Frame = 1
Query:  175 QGLQISAELTRQDGQVFNSMLFENNTQTPLDGFMIQFNKNTFGLA-AGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKN-NQQPVWYFNDKISLHVLFTEDGRMERGSFLETWRSLPDSNE----VLKDLPGVVVSNVEATLDLLAASHMFFIAKRKNANQDVFYFSAKIPPGVPFLIELTTVIGNPGVKCANKTPNPEIAPSF 798
            Q +QIS   TR  G++   +   N +Q  +  F IQF +N+FG++ A   L    ++ G S    +P+     +S  P + ++ +A+     Q  +YF     L  L TE GR++R S+L  W+S+P+SNE    +   LP V   +V++ L  L + ++F I ++K  NQ++ + S K    V  LIEL   I     +C++KT +P+I   F
Sbjct:  721 QAIQISGAFTRFQGRINLELNLLNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQIS-NPLNPVIDMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV---DVDSILRRLNSKNIFEIVRKKAPNQEISFLSCKTESSVYILIELAFNISTNTCRCSSKTTSPDIMALF 930          
The following BLAST results are available for this feature:
BLAST of DY258792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AP1B1_RAT6.096e-2938.76AP-1 complex subunit beta-1 OS=Rattus norvegicus G... [more]
AP1B1_MOUSE3.951e-2838.28AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1... [more]
AP1B1_HUMAN6.739e-2837.74AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1... [more]
AP2B1_RAT1.076e-2536.41AP-2 complex subunit beta OS=Rattus norvegicus GN=... [more]
AP2B1_MOUSE1.076e-2536.41AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1... [more]
AP2B1_HUMAN1.076e-2536.41AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1... [more]
AP2B1_BOVIN1.076e-2536.41AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 P... [more]
AP1B1_BOVIN1.076e-2536.41AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1... [more]
AP1B_DICDI9.754e-1931.31AP-1 complex subunit beta OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BH12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258792 ID=DY258792; Name=DY258792; organism=Citrus clementina; type=EST; length=1081bp
TATGCTCCTTTAAGACAGCCAGCACCTCCTCCAGCTGCTCCTGTGTCTCC
TCCAGTGCCTGATTTACTTGGTGATCTGATAGTCTTAGATAATAGTGCTG
CCATCGTCCCTGCTGACCAGGCTGCAGCTTCTCCTGTCCCTGCTTTACCT
GTTGTGCTACCGGCATCAACTGGACAGGGTCTGCAAATCAGTGCAGAGTT
AACAAGACAGGATGGTCAAGTATTTAACAGCATGCTGTTTGAGAACAATA
CACAGACTCCACTTGATGGGTTCATGATTCAATTTAACAAGAACACATTT
GGTCTTGCAGCTGGTGGAGCCCTTCAGGTGCCACAATTGCAACCGGGAAC
TTCAGGCAGGACACTGTTGCCAATGGTATTGTTCCAGAATATGTCTGCTG
GTCCTCCAAGCTCACTTCTGCAAGTAGCTGTGAAGAATAATCAGCAGCCA
GTATGGTACTTCAATGATAAGATCTCTCTTCATGTGCTTTTCACTGAGGA
TGGGAGAATGGAGAGAGGAAGCTTTCTGGAGACGTGGAGGTCCCTTCCTG
ATTCCAACGAGGTATTGAAGGACCTTCCAGGGGTTGTGGTGAGCAACGTG
GAAGCAACTCTGGATCTGCTGGCTGCATCACACATGTTCTTTATAGCAAA
GCGCAAGAATGCAAACCAGGATGTTTTTTACTTCTCTGCTAAGATCCCTC
CGGGTGTACCCTTCTTGATTGAACTCACCACAGTTATTGGAAATCCTGGG
GTCAAGTGTGCGAATAAAACTCCAAATCCTGAAATTGCACCCTCTTTTCT
TTGAAGCCATAGAAAACCTTTCTCAAGGCTTGGATCTGTTTGCTCAAATT
TTTTTTTAGTGGAAGGAAAATCCTACCAGGGTGACCAAGTTTTTGGGGGG
GCCATTCCGCTGGTTTCCAATTTTTAAACCTTTTCCCCCGCTCCCCCAAC
CCCCCCGCCCGCTTGTCTGTTATTCAACTAAACTTTGAAAATTAACTTTT
TTTTTTTTTCCCCCCTTTTTGGTGTAAACCCCCCCCCCTTTGTGGGAATG
GTTTTATAAGTGAAATTGAACATTTTAATTT
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