DY258800

Overview
NameDY258800
Unique NameDY258800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 6.952e-91
Identity = 166/192 (86.46%), Postives = 177/192 (92.19%), Query Frame = 1
Query:    1 ENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            E VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1698 EIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.548e-58
Identity = 115/190 (60.53%), Postives = 143/190 (75.26%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1326 VNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.327e-44
Identity = 98/191 (51.31%), Postives = 121/191 (63.35%), Query Frame = 1
Query:    7 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1813 VTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.244e-39
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1473 NVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.205e-34
Identity = 82/192 (42.71%), Postives = 117/192 (60.94%), Query Frame = 1
Query:    1 ENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            ++++ +N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1303 KSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 5.598e-32
Identity = 74/185 (40.00%), Postives = 108/185 (58.38%), Query Frame = 1
Query:    1 ENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 552
            E + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2437 EMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 1.294e-20
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N +E+++L  D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  709 NRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.271e-19
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            N +E++    D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  719 NRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.697e-18
Identity = 65/186 (34.95%), Postives = 91/186 (48.92%), Query Frame = 1
Query:   19 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 576
            N+  +I LV +  +   I +Q   F  GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  856 NVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of DY258800 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.283e-17
Identity = 66/199 (33.17%), Postives = 92/199 (46.23%), Query Frame = 1
Query:    1 ENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 561
            EN+ +   N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  692 ENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866          
The following BLAST results are available for this feature:
BLAST of DY258800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UPL3_ARATH6.952e-9186.46E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH4.548e-5860.53E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN8.327e-4451.31Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.244e-3947.85Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST1.205e-3442.71Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN5.598e-3240.00E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UBE3A_HUMAN1.294e-2035.71Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE9.271e-1934.62Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
UPL6_ARATH2.697e-1834.95E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
WWP2_MOUSE2.283e-1733.17NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB04FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258800 ID=DY258800; Name=DY258800; organism=Citrus clementina; type=EST; length=1044bp
GAAAATGTTGACATTAATAACTTGGAGGAATACATATCCTTGGTAGTTGA
TGCCACTGTCAAGACAGGCATCATGCGGCAAATGGAAGCTTTTAGAGCTG
GCTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTCAT
GAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGC
ACTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCCTG
CAATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGCAG
CGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGG
GTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAA
CTGCACCTAATACAGCATCAAACGGAACCGGGCCTTCGGAATCAGCGGAT
GACGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCC
TTACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCG
AAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCGAAACTAACCGATGG
ACCTTTGTATACTAATATTTGTGTCATCAAGTCAATTCTCTTACCTGGGG
ATTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCT
TTTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTT
TTTGTTTCAGGTCAGACTTCAGGCTGCCACAGTGCCCCACTCTCTCAACA
AAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGAC
TTTGGATATTAATAAGAAAACTTAAATTTTTTTTTTTGTCTTTTTTCCCC
TCATTGAACAATTTATTGCCTGCCGAAGTCCAACTAACCTTGTATGGCAT
AAAAATGAAGGGGAAGGAAAAAAAAAATTTGGTTAAATGGAATCCCCTTT
ATTTAAACCCCCAATTTCCTTTTCCATTTAAAATTCTTTTGAAT
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