DY258810

Overview
NameDY258810
Unique NameDY258810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258810_ssr1104 microsatellite DY258810_ssr1104:1104..1113. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1251 contig Ccv1_Contig1251:1..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.038e-13
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  249 PTSVPGPKWAPSQRSADRVVASPRAQSDPVQWILLCKLQAELPMARRHSLRRFVEKRRDRLVSKNPYPVQSKAK 470
            P S P    APS  S   V ASP AQ  P+Q I  C+  A+LP+ARRHSL+RF+EKRRDRLV+KNPYP     K
Sbjct:   98 PVSSPALNRAPSFSSTSNV-ASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPTSDFKK 170          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.312e-13
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTYLKTNKPQF+EIISSTKIFTE ++ALL+
Sbjct:  447 DSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.020e-13
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTYLKTNKPQF+EIISSTKIFTE ++ALL+
Sbjct:  447 DSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQ 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.151e-13
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLVELRTYLKTNKPQF+EIISSTKIFTE ++A+L+
Sbjct:  447 DSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEAILK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.148e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLVELRTYLKTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.148e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLVELRTYLKTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.148e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLVELRTYLKTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.148e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLVELRTYLKTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_LACSA (ATP synthase subunit alpha, chloroplastic OS=Lactuca sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.499e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTYLKTNKPQF+EIISSTK FTE ++A+L+
Sbjct:  447 DSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEAILK 491          
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.957e-12
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLVELRTY+KTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLK 491          
The following BLAST results are available for this feature:
BLAST of DY258810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TIF3B_ARATH1.038e-1356.76Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
ATPA_DAUCA2.312e-1386.67ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_CITSI3.020e-1386.67ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_HELAN5.151e-1382.22ATP synthase subunit alpha, chloroplastic OS=Helia... [more]
ATPA_TOBAC1.148e-1282.22ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO1.148e-1282.22ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY1.148e-1282.22ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_ATRBE1.148e-1282.22ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]
ATPA_LACSA1.499e-1282.22ATP synthase subunit alpha, chloroplastic OS=Lactu... [more]
ATPA_EUCGG1.957e-1282.22ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258810 ID=DY258810; Name=DY258810; organism=Citrus clementina; type=EST; length=1160bp
TTGATTCATTATATATTGGTCAAGTAAGAAAATTTCTCGTTGAGCTACGT
ACTTACTTAAAAACGAATAAACCTCAGTTCCGAGAGATAATATCTTCTAC
CAAGATATTCACCGAATAATCAAAGGCGCTTTTGCGAGAGTCTATTCAGG
AACTCAAGGAAAGTTTGCTACTGAAAGAACAATTATAGATACCACATCAG
TCTTAGTCATACTTTATAATAGATAGGAATATAGACAAAAAAAAAGGGCC
TACCTCTGTTCCTGGTCCAAAGTGGGCTCCTTCACAGCGCAGTGCTGATC
GTGTTGTGGCATCGCCTCGGGCACAATCAGATCCAGTACAATGGATACTC
CTCTGCAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCG
GCGATTTGTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCCATATC
CTGTTCAATCAAAGGCAAAAGCTTCTGACGCCAATGCTCAGACTCCTGCC
GAGGCAGGTTGCTTTGATAATACTTCCGTGCCTCAGGAAGAATTGCAACC
TACCGCTGCAGCCCATGTTGCATAAATTACCTATCATGCTTAGATGTTTG
TAGTAGATAATCCAGAACTATCTACTTAGATAAACTAGACATTGCTGTAT
TGTTTGTGGGGAAAAACCCAAGCGCACAGGGTGTGATGATGTTTGAATTG
CTTTTGGAATTTGGAGGAATGCCACGGGTTACACTTCTCATTGGCCGGTA
CCCAACAAAAAAAAAAAATTTCGTGTGTAGGGTGCTTCCACCCCGAGGAT
TGCACCTTTTAAATCGGCAATGAAGTAATTAGCTGAAATTTTTAGGCTTG
TCGAATACAACAACAATTGAAATGTCCGGGACCCAACTGGGAGCGTCAAA
TTGTAAGCAACTGATACTGCTGGGCACACCCGGCCGGGCACAAGCTAAAC
ATTCCACCCCTCTTTGGCACTTTGAACCAGCACCAAATTAACAGCAAAAG
ATGGAGCAAGCCATCGATATGCTCTGCCCACAGAAGCAAAAAACGAATTG
CAACTCTACTCAGATAACGGGATGGAAAGAAGAAGGGTGACTATCTCGGT
CGGGAGAGAGAGACAGAAATGCATCCCTCATCGGCCTCTCACGCCAATAG
GACTCCCCCC
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