DY258812

Overview
NameDY258812
Unique NameDY258812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1269
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13831 contig Ccv1_Contig13831:1450..2718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.084e-43
Identity = 88/127 (69.29%), Postives = 105/127 (82.68%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            KN ++VAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDINT  IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  401 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.154e-43
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            KN ++VAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  401 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.154e-43
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            KN ++VAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  401 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.154e-43
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            KN ++VAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  401 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.199e-42
Identity = 86/127 (67.72%), Postives = 103/127 (81.10%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            KN ++VAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR KHA     G  YGVD+N   IAD+F   VWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  401 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRAKHA---QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.980e-37
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 377
            K+ ++VAGGGAI+ME+SKYLR  S +I GK Q  IN++AKALEVIPRQ+ DNAGFD+TD+LN+LRQKHA   GE   +GVDI   GI D++ + +WEP++VK+N+I AATEA CLILSVDETV+N
Sbjct:  401 KHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAFAKALEVIPRQIADNAGFDSTDILNQLRQKHA--QGE-KWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQN 522          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.676e-36
Identity = 77/128 (60.16%), Postives = 97/128 (75.78%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN-TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            K + +V GGGAI++EIS+ LR  SR   GK Q  IN++AKALEVIP+ + DNAG D+  VLNKLRQKHAL + +   +GVDIN   GI ++F NFVWEP +V+ NA +AATEAAC ILS+DETV+NPK
Sbjct:  401 KANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKALEVIPKTIADNAGHDSIQVLNKLRQKHALESDQSKNFGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETVRNPK 528          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.734e-36
Identity = 80/125 (64.00%), Postives = 96/125 (76.80%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 377
            +N  +VAGGGA +ME+SK LR  S+ IAGK Q  IN++AKALEVIPRQLC+NAGFDA ++LNKLR  H+   GE   YGV   T  I D+FA FVWEPA+VKINA+N+ATEA  LILSVDET+ N
Sbjct:  405 QNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHS--KGE-KWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.734e-36
Identity = 78/126 (61.90%), Postives = 102/126 (80.95%), Query Frame = 3
Query:    3 KNSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 377
            KN+ +VAGGGA +ME+SKYLR  S  I+GK Q FI ++A++LEVIPRQLCDNAGFD+T++LNKLR +HA    +G  + GVD+++ G+A++F  FVWEP+ VK NAI +ATEAA LILSVDET+KN
Sbjct:  406 KNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHA----KGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKN 527          
BLAST of DY258812 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.062e-30
Identity = 68/125 (54.40%), Postives = 91/125 (72.80%), Query Frame = 3
Query:    6 NSTLVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 380
            NS +V G G+I+M++SKYLR  SR+I  K Q  + S+AKALE IPR L  NAG+D+TD+LNKLR+KH+  T +   YGVD   G I +++ N ++E   +K N I +ATEAACLILS+DET+KNP
Sbjct:  404 NSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSD-IWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIKNP 527          
The following BLAST results are available for this feature:
BLAST of DY258812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
TCPH_BOVIN1.084e-4369.29T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_PONAB3.154e-4368.50T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_MOUSE3.154e-4368.50T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_HUMAN3.154e-4368.50T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_CHICK1.199e-4267.72T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_DICDI1.980e-3764.00T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPH_TETPY1.676e-3660.16T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPH_YEAST3.734e-3664.00T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPH_SCHPO3.734e-3661.90Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_PLAF73.062e-3054.40T-complex protein 1 subunit eta OS=Plasmodium falc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258812 ID=DY258812; Name=DY258812; organism=Citrus clementina; type=EST; length=1269bp
CGAAGAATTCCACTTTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGATTCCCAGTGTAAGTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCCACGAGACTATAGTTTTGTCCCATGGTGGAATTATGGCC
GTGGTTTTTATTATGGTAAATGGGGTTTTCTTCCAAAAAAAAAAAAAAAA
AAAAAACCCCATTTTCTAGTACCAGTTGGCATAAAAAAAAGGCCTTGGCT
ATCATTTTGTTGAAACGAAACGGCCCGTATCCGTCAAAGAAAAAATCTTT
ATTGGCCTCCCGCGGAAAATCCCCAAAATTGAGGGAAACAGGGGGGCACA
ATTCGGTTCCCGGGAACCCGGGCCCGGGGCGCAAAAATCCCCAAGGCGGC
ATGGACGGAAAAACCACTATGTCTCCGAGTTGGAAACAGCCTCTCAAGAT
CCAATTGTAACAGCCACGTTTTTTTCCATCAAGGGGTATACCATCTTTAC
CTATATTAAAAACCCCGGTTCTTTGACTAGTGGAGAAAAAAATCCCCCAA
GGGGCGAGTATCCCAGAAGAAGAGCCTCCACCCGTTCGTGATTGCCGTCC
ACCGGAGTGCCACGATATCCCGACCCCCCCATATCTTATAAATTACTCAT
TCTCTTGTCCAACACTCCCCCCCCCCCCATTACCACACCCAACGAAACAT
AAATCACCTACCCTACCCA
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