DY258813

Overview
NameDY258813
Unique NameDY258813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1252 contig Ccv1_Contig1252:1..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258813 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.180e-15
Identity = 55/173 (31.79%), Postives = 75/173 (43.35%), Query Frame = -2
Query:   66 LAISLLSVFSSHPN----DTNALSLFRLQTDTHGNLLSNWKGADACAAAWTGVVCSPKSERVVSLSLPSHSLRGPIAPXXXXXXXXXXXXXDNRLNGTILP--LTNCTNLKLAYLSGNDFSAEIPHQISSLKGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXTGRIP 566
            L IS LS  ++       D  AL  FR        ++  W+  D     W GV C  K++RV++LSL  H LRGP+ P              N      +P  L NCT L+  YL  N  +  IP +I +L G+  LDLS+NN+ G IP  +                 G+IP
Sbjct:   14 LLISFLSALTNENEAISPDGEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIP 186          
BLAST of DY258813 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.040e-13
Identity = 57/179 (31.84%), Postives = 78/179 (43.58%), Query Frame = -2
Query:   66 LYVPSLAISLLSVFS-SHPNDTNALSLFRLQTDTHGNLLSNWKGADACAAAWTGVVCSPKSE----RVVSLSLPSHSLRGPIAP-XXXXXXXXXXXXXDNRLNGTILP-LTNCTNLKLAYLSGNDFSAEIPHQISSLKGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXTGRIP 581
            L V S  +SLL     +HP D +AL     +     N L +WK  D CA+ WTGV+C P        V  L L + +L G +AP               N L G I P L N T+L    LSGN  +  +P ++ SL  +L L +  N I G++P  +                TG+IP
Sbjct:   12 LVVSSCCLSLLDAQEITHPTDVSALQYVHRKLKDPLNHLQDWKKTDPCASNWTGVICIPDPSDGFLHVKELRLLNMNLTGQLAPELGLLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDYNEISGKLPTSLANLKKLKHFHMNNNSITGQIP 190          
BLAST of DY258813 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.665e-13
Identity = 52/173 (30.06%), Postives = 74/173 (42.77%), Query Frame = -2
Query:   66 LAISLLSVFSSHPN----DTNALSLFRLQTDTHGNLLSNWKGADACAAAWTGVVCSPKSERVVSLSLPSHSLRGPIAPXXXXXXXXXXXXXDNR-LNGTI-LPLTNCTNLKLAYLSGNDFSAEIPHQISSLKGILRLDLSDNNIRGRIPEQVXXXXXXXXXXXXXXXXTGRIP 566
            L ISLL   S+       D  AL  FR       + +  W+  D     W GV C  K++RV++L+L  H + GP+ P              N  L G I   L NCT L+  +L  N F+  IP ++  L G+ +LD+S N + G IP  +                 G+IP
Sbjct:   15 LLISLLCSLSNESQAISPDGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIP 187          
BLAST of DY258813 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.254e-11
Identity = 55/146 (37.67%), Postives = 69/146 (47.26%), Query Frame = -2
Query:  129 ISLLSVFSSHPNDTNALSLFRLQTDTHGNLLSNWKGADACAAAWTGVVCSPKSERVVSLSLPSHSLRGPIA-PXXXXXXXXXXXXXDNRLNGTILP-LTNCTNLKLAYLSGNDFSAEIPHQISSLKGILRLDLSDNNIRGRIPEQV 560
            I L+SV S    D  AL    L+   HG  L     A  C   W GV C  +S RV +L LP   L GP+                 N LNG + P   N T L+  YL GN FS EIP  + +L  I+R++L+ NN  GRIP+ V
Sbjct:   16 ICLVSVTSDLEADRRAL--IALRDGVHGRPLLWNLTAPPCT--WGGVQC--ESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNV 155          
BLAST of DY258813 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = -2
Query:  129 SLYVPSLAISLLSVFSS----HPNDTNALSLFRLQTDTHGNL-LSNWKGADACAAAWTGVVCSPKSERVVSLSLPSHSLRGPIAP-XXXXXXXXXXXXXDNRLNGTI-LPLTNCTNLKLAYLSGNDFSAEIPHQISSLKGILRLDLSDNNIRGRIPEQV 584
            S Y  SLA+ L   F S      N+  AL  F+        L +SNW   ++    WTG+ CSP  + V+ +++ + S++G +AP               N L GTI   + N  NLK+  L  N     IP +I SL GI+ ++L  N + G++P ++
Sbjct:    3 SKYFCSLALVLGLFFVSCDGFASNEVQALRRFKEAIYEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAEL 161          
The following BLAST results are available for this feature:
BLAST of DY258813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FEI2_ARATH2.180e-1531.79LRR receptor-like serine/threonine-protein kinase ... [more]
Y5374_ARATH2.040e-1331.84Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH2.665e-1330.06LRR receptor-like serine/threonine-protein kinase ... [more]
Y5659_ARATH4.254e-1137.67Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y1634_ARATH9.477e-1130.82Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CC10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258813 ID=DY258813; Name=DY258813; organism=Citrus clementina; type=EST; length=1290bp
CGACCGTAGAGTTCGTTGTTTGACAAGTTAAGCTCTTTTAAATCCTTAAG
CGAGGACGATAAATCGGGGATTCGACCAGTGAGCTCATTGTTCTGTAACC
GGAGAGTCAAGAGCCGGGTCAAGTTCGTCACTTGTTCCGGAATTCTGCCG
CGGATGTTGTTATCCGATAAATCTAAGCGGAGAATCCCCTTGAGGGACGA
TATTTGGTGCGGGATTTCGGCGGAGAAGTCGTTGCCGGAGAGGTAAGCGA
GTTTGAGGTTGGTGCAGTTGGTGAGGGGCAAAATGGTGCCGTTCAAGCGG
TTGTCGTGGAGGTCGAGGAAGCGGAGCTGGTCGAGGAGGGAGAGGGGGGC
GATGGGCCCACGTAGTGAATGGGAGGGGAGGGAGAGTGAAACCACGCGCT
CGCTTTTGGGCGAGCAAACGACGCCGGTCCATGCTGCGGCGCACGCGTCG
GCGCCCTTCCAGTTGGAGAGGAGGTTGCCGTGAGTGTCGGTCTGGAGGCG
AAAAAGCGAGAGGGCATTTGTGTCATTCGGGTGTGAAGAAAACACGGAGA
GAAGTGAGATAGCCAGAGAAGGAACATAGAGAGAATCTTTCTTCATGCTG
GACTCCGGATGAGATAGTACGCTTGAGGCCAGATGGGAACAGAATAGTGA
GCGAAAGTGTCTATAAAGATATATAACTAACAGATATGATACAGGTGCTT
GTTATACAAATGGCTTTAGGTCTTGTCTTATGAAAACTGAAAGGAAAATA
CTTACATTTATTTTCAATTTGGATACTTCCCCCCTTTTTCATAACTAATT
GGGGGTATTAAAAAAAACTTGTTCCTCCTTTTGGTGAACCCGCCCGGGTC
CGCGCCTATCAAAGTAATTTCTTTTTTTGCCCTCCTGGGGAATACCCCCA
AAAGGGGATGTCATTAAATTTAAAAAAAAAAATAAACAGGAAAACTAGGG
CCCCCCGCCTTAAATGCTTAAAATTGACATTAAACCAAAAAAAAAAAAAA
TTTAATTTTTTTAAAAAAAAACACGCCTCACTCCACCCCAAAAACAATAT
TCTTTTTTTTTCGGCCGAATGGTCATCCCCCCTTTTTATGAAAACGCCCC
CTTCCCGTTCTGAGAAGAAAAACGAACCCCCCCCCCGCCAGCCCCGTCAA
AAAGATCCACCTTGTCACTTGCGTTCTGCGCTACTCGCCAATCTCCCCAT
CACTCCCCCCCAATCCGCACCCAACACAAAACCACCCTCCCAACCTTCTT
TTCTTTCCCCCCCGCCCCCTCCAACCAAAAACAAGGTGCG
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